View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9460_low_19 (Length: 402)
Name: NF9460_low_19
Description: NF9460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9460_low_19 |
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| [»] chr4 (7 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 388; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 7 - 402
Target Start/End: Complemental strand, 38082867 - 38082472
Alignment:
| Q |
7 |
tttggtgttcacatttgccaatcttctgaaattgttcttgaagtatttaacaccccagatactagcttgcttgtagcttgtgtatccatcaatgttattc |
106 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38082867 |
tttggtcttcacatttgccaatcttctgaaattgttcttgaagtatttaacaccccagatactagcttgcttgtagcttgtgtatccatcaatgttattc |
38082768 |
T |
|
| Q |
107 |
acaccaatatcaaggtctctataattgatgtatccagctcttggagactttgaaacaaaaggttccatgtaattataaagttttctaatccaattaatgt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38082767 |
acaccaatatcaaggtctctataattgatgtatccagctcttggagactttgaaacaaaaggttccatgtaattataaagttttctaatccaattaatgt |
38082668 |
T |
|
| Q |
207 |
gcagtttttccacctcatcaccttcctgttgccaatcaacctggtaatgaatatgatataaatttccttttctatgtggaaatggaatttcagactctga |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38082667 |
gcagtttttccacctcatcaccttcctgttgccaatcaacctggtaatgaatatgatataaatttccttttctatgtggaaatggaatttcagactctga |
38082568 |
T |
|
| Q |
307 |
aatagtatccattattccaccataaggaaaccatatcatcattgcaccttcggcaccttcttcatgaaacaaagaccatattccttctaatccatt |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38082567 |
aatagtatccattattccaccataaggaaaccatatcatcattgcacctttggcaccttcttcatgaaacaaagaccatattccttctaatccatt |
38082472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 20 - 400
Target Start/End: Complemental strand, 38087282 - 38086902
Alignment:
| Q |
20 |
tttgccaatcttctgaaattgttcttgaagtatttaacaccccagatactagcttgcttgtagcttgtgtatccatcaatgttattcacaccaatatcaa |
119 |
Q |
| |
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|||||||| ||| |||| || || |||||||| ||||||||||| |||||||||| ||| ||||||||||| |||| ||||||||||||||||||||||| |
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| T |
38087282 |
tttgccaaccttttgaagttatttttgaagtacttaacaccccaaatactagcttccttatagcttgtgtacccattaatgttattcacaccaatatcaa |
38087183 |
T |
|
| Q |
120 |
ggtctctataattgatgtatccagctcttggagactttgaaacaaaaggttccatgtaattataaagttttctaatccaattaatgtgcagtttttccac |
219 |
Q |
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||||||| ||||| || ||| ||||||| |||||||||| ||||||||||||||| ||| |||| ||||||||||||||||||||||||||| ||||||| |
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| T |
38087182 |
ggtctctgtaattaatatatgcagctctcggagactttgtaacaaaaggttccatataactatacagttttctaatccaattaatgtgcagtgtttccac |
38087083 |
T |
|
| Q |
220 |
ctcatcaccttcctgttgccaatcaacctggtaatgaat-atgatataaatttccttttctatgtggaaatggaatttcagactctgaaatagtatccat |
318 |
Q |
| |
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|||||||||||| || ||||||| |||| ||| ||||| |||| |||| ||||| ||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
38087082 |
ctcatcaccttcttgatgccaatgaaccgagtattgaatcatga-ataagtttccacttctatgaggaaatggaatttcagactctgaaatagtatccat |
38086984 |
T |
|
| Q |
319 |
tattccaccataaggaaaccatatcatcattgcaccttcggcaccttcttcatgaaacaaagaccatattccttctaatcca |
400 |
Q |
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| | |||||||| ||||||||||||||||||||| ||| || ||| ||||||| ||| |||| |||||| |||||||||||| |
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| T |
38086983 |
tttgccaccatatggaaaccatatcatcattgcatctttggaaccctcttcatcaaataaaggccatatgccttctaatcca |
38086902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 14 - 396
Target Start/End: Complemental strand, 38073778 - 38073396
Alignment:
| Q |
14 |
ttcacatttgccaatcttctgaaattgttcttgaagtatttaacaccccagatactagcttgcttgtagcttgtgtatccatcaatgttattcacaccaa |
113 |
Q |
| |
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||||| |||||||||||| |||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
38073778 |
ttcacttttgccaatcttttgaagttgttcttgaagtacttaacaccccaaatactagcttgcttgtagcttgtgtatccattaatgttattcaccccaa |
38073679 |
T |
|
| Q |
114 |
tatcaaggtctctataattgatgtatccagctcttggagactttgaaacaaaaggttccatgtaattataaagttttctaatccaattaatgtgcagttt |
213 |
Q |
| |
|
||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||| || |
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| T |
38073678 |
tatcaaggtctctataattaatatatgcagctcttggagactttgaaacaaaaggttccatataactataaagttttctaatccaattgatgtgcaactt |
38073579 |
T |
|
| Q |
214 |
ttccacctcatcaccttcctgttgccaatcaacctggtaatgaatatgatataaatttccttttctatgtggaaatggaatttcagactctgaaatagta |
313 |
Q |
| |
|
|||||||||||||||||| || ||||| | || || ||||| | ||||| |||| | |||||||||||||||||||||||| |||||||| || |
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| T |
38073578 |
ttccacctcatcaccttcttgatgccagtgcactgcatattgaattttgtataaggttccatatctatgtggaaatggaatttcagattctgaaatctta |
38073479 |
T |
|
| Q |
314 |
tccattattccaccataaggaaaccatatcatcattgcaccttcggcaccttcttcatgaaacaaagaccatattccttctaa |
396 |
Q |
| |
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|||||||| ||||||||||||||| ||| ||| | | || |||| ||||| ||||||| |||||||| ||||| ||||||||| |
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| T |
38073478 |
tccattatgccaccataaggaaacaataccattagtacatcttccgcaccatcttcatcaaacaaaggccataatccttctaa |
38073396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 25 - 400
Target Start/End: Complemental strand, 38059433 - 38059058
Alignment:
| Q |
25 |
caatcttctgaaattgttcttgaagtatttaacaccccagatactagcttgcttgtagcttgtgtatccatcaatgttattcacaccaatatcaaggtct |
124 |
Q |
| |
|
||||||| |||| |||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||| ||| |||||||| ||||||||||| ||| |
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| T |
38059433 |
caatcttttgaagttgttcttaaagtatttaacaccccaaacactagcttgcttgtagcttgtgtatccattaatattattcaccccaatatcaagatct |
38059334 |
T |
|
| Q |
125 |
ctataattgatgtatccagctcttggagactttgaaacaaaaggttccatgtaattataaagttttctaatccaattaatgtgcagtttttccacctcat |
224 |
Q |
| |
|
||||| || || ||| |||||||||||||||||||||||||||||||||| ||| | || | ||||| ||||||||| || | || |||||| ||||||| |
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|
| T |
38059333 |
ctatagttaatatatgcagctcttggagactttgaaacaaaaggttccatataactgtacaattttccaatccaattcattttcattttttctacctcat |
38059234 |
T |
|
| Q |
225 |
caccttcctgttgccaatcaacctggtaatgaatatgatataaatttccttttctatgtggaaatggaatttcagactctgaaatagtatccattattcc |
324 |
Q |
| |
|
||| ||| || ||||||| ||| ||||| ||| |||||||||||||| | ||| |||||||||||||||||||||||||||||| |||||||||| || |
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|
| T |
38059233 |
cactttcttgatgccaatgaactgagtaataaatttgatataaatttccatgtctgtgtggaaatggaatttcagactctgaaatattatccattatgcc |
38059134 |
T |
|
| Q |
325 |
accataaggaaaccatatcatcattgcaccttcggcaccttcttcatgaaacaaagaccatattccttctaatcca |
400 |
Q |
| |
|
|||||||||||| ||||||| ||| ||| ||| |||||| ||||||||||||| || ||||||||||||||||||| |
|
|
| T |
38059133 |
accataaggaaaacatatcaccatggcatctttggcaccatcttcatgaaacataggccatattccttctaatcca |
38059058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 7 - 400
Target Start/End: Original strand, 38061003 - 38061396
Alignment:
| Q |
7 |
tttggtgttcacatttgccaatcttctgaaattgttcttgaagtatttaacaccccagatactagcttgcttgtagcttgtgtatccatcaatgttattc |
106 |
Q |
| |
|
|||||| ||||| ||| |||||||| |||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| | |||||| |
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| T |
38061003 |
tttggtcttcacttttaccaatcttttgaagttgttcttgaagtacttaacaccccaaatactagcttgcttgtagcttgtgtatccattgttattattc |
38061102 |
T |
|
| Q |
107 |
acaccaatatcaaggtctctataattgatgtatccagctcttggagactttgaaacaaaaggttccatgtaattataaagttttctaatccaattaatgt |
206 |
Q |
| |
|
|| ||||||||||| |||||||||||||| ||| |||||||||| ||||||||||||||||||||||| || |||| ||||||||||||||||| || | |
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|
| T |
38061103 |
accccaatatcaagatctctataattgatatatgcagctcttggtgactttgaaacaaaaggttccataaaactatacagttttctaatccaattcattt |
38061202 |
T |
|
| Q |
207 |
gcagtttttccacctcatcaccttcctgttgccaatcaacctggtaatgaatatgatataaatttccttttctatgtggaaatggaatttcagactctga |
306 |
Q |
| |
|
| ||||||||||||||||| ||| || ||||||| |||| ||| ||| || ||||||||||| | |||||||||||||||||||| ||||||||| |
|
|
| T |
38061203 |
taattttttccacctcatcactttcttgatgccaatgaaccgagtacaaaatttggtataaatttccatatctatgtggaaatggaattttagactctga |
38061302 |
T |
|
| Q |
307 |
aatagtatccattattccaccataaggaaaccatatcatcattgcaccttcggcaccttcttcatgaaacaaagaccatattccttctaatcca |
400 |
Q |
| |
|
|||| ||| |||||| |||||||||||||| | || ||||| | ||| |||||| ||||||||||||| | ||| |||| |||||||||| |
|
|
| T |
38061303 |
aatattattcattatgccaccataaggaaaaaaatacaccattgaatctttggcaccatcttcatgaaacatacgccacattctttctaatcca |
38061396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 7 - 334
Target Start/End: Complemental strand, 37955122 - 37954795
Alignment:
| Q |
7 |
tttggtgttcacatttgccaatcttctgaaattgttcttgaagtatttaacaccccagatactagcttgcttgtagcttgtgtatccatcaatgttattc |
106 |
Q |
| |
|
|||||| ||||| |||||||||||| |||| || ||||||||||| ||||||||||| || ||||||| ||| |||||||||||||||| | |||||| |
|
|
| T |
37955122 |
tttggtcttcacttttgccaatcttttgaagttattcttgaagtacttaacaccccatatgctagctttcttatagcttgtgtatccattgttattattc |
37955023 |
T |
|
| Q |
107 |
acaccaatatcaaggtctctataattgatgtatccagctcttggagactttgaaacaaaaggttccatgtaattataaagttttctaatccaattaatgt |
206 |
Q |
| |
|
|| ||||| ||||||||||||||||| | ||| || ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||| |
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| T |
37955022 |
accccaatgtcaaggtctctataattcacatatgcacctcttggagactttgaaacaaaaggttccatataaatataaagttttctaatccaatttatgt |
37954923 |
T |
|
| Q |
207 |
gcagtttttccacctcatcaccttcctgttgccaatcaacctggtaatgaatatgatataaatttccttttctatgtggaaatggaatttcagactctga |
306 |
Q |
| |
|
|| |||||| |||| ||||||||||| || |||| ||| || ||||| || || | ||||| ||| ||||| ||||||||||||||||| || |
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|
| T |
37954922 |
gccttttttctaccttatcaccttcctctttccaaaaaactaagtgctgaatttggtaaatgtttccagctctgtgtgggaatggaatttcagactccga |
37954823 |
T |
|
| Q |
307 |
aatagtatccattattccaccataagga |
334 |
Q |
| |
|
||| ||||||||||||||||||||| |
|
|
| T |
37954822 |
aatctcgtccattattccaccataagga |
37954795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 277 - 337
Target Start/End: Complemental strand, 38078205 - 38078145
Alignment:
| Q |
277 |
tctatgtggaaatggaatttcagactctgaaatagtatccattattccaccataaggaaac |
337 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
38078205 |
tctatgtggaaatggaatttcaaattctgaaatattatccattatgccaccataaggaaac |
38078145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 269 - 309
Target Start/End: Complemental strand, 2153126 - 2153086
Alignment:
| Q |
269 |
tttccttttctatgtggaaatggaatttcagactctgaaat |
309 |
Q |
| |
|
|||||||||||||||||||| || |||||||| |||||||| |
|
|
| T |
2153126 |
tttccttttctatgtggaaaagggatttcagattctgaaat |
2153086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 269 - 309
Target Start/End: Complemental strand, 2176785 - 2176745
Alignment:
| Q |
269 |
tttccttttctatgtggaaatggaatttcagactctgaaat |
309 |
Q |
| |
|
|||||||||||||||||||| || |||||||| |||||||| |
|
|
| T |
2176785 |
tttccttttctatgtggaaaagggatttcagattctgaaat |
2176745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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