View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9460_low_20 (Length: 402)
Name: NF9460_low_20
Description: NF9460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9460_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 17 - 394
Target Start/End: Complemental strand, 652243 - 651866
Alignment:
| Q |
17 |
agatccaagatagacaaagtccaatactataggcaatttatttgtgttacctttgtgaaagggaaatatacaaatctaaggcgtgcatttgcttctttgg |
116 |
Q |
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| T |
652243 |
agatccaagatagacaaagtccaatactataggcaatttatttgtgttacctttgtgaaagggaaatatacaaatctaaggtgtgcatttgcttctttgg |
652144 |
T |
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| Q |
117 |
attcccttgaacctaaaatatagtaattcaaatagaactcaacactcacatttctttaaagttaattagatgaaatggatatgaagtaataatatagaac |
216 |
Q |
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| T |
652143 |
attcccttgaacctaaaatatagtaattcaaatagaactcaacactcacatttctttaaagttaattagatgaaatggatatgaagtaataatataggac |
652044 |
T |
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| Q |
217 |
atactgattnnnnnnnntatcatttatcatatcaaaaactaaacattgctagatagagttataattcatgtagataccatggtcttgattatatgacatc |
316 |
Q |
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| T |
652043 |
atactgattaaaaaaaatatcatttatcatatcaaaaactaaacattgctagatagagttataattcatgtagataccatggtcttgattataagacatc |
651944 |
T |
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| Q |
317 |
tgaatctgcagaacaaattcaggaccattgcaagaatgcaaattggtagtggcaacctccccaccttgaatctctgct |
394 |
Q |
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| T |
651943 |
tgaatctgcagaacaaattcaggaccattgcaagaatgcaaattggtagtggcaacctccccaccttgaatctctgct |
651866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 17 - 167
Target Start/End: Complemental strand, 688149 - 687999
Alignment:
| Q |
17 |
agatccaagatagacaaagtccaatactataggcaatttatttgtgttacctttgtgaaagggaaatatacaaatctaaggcgtgcatttgcttctttgg |
116 |
Q |
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| T |
688149 |
agatccattatagacaaagtccaatacaataggctatttatttccattacctctgagaaagggaaatatacgaatctaaggcgtgcatttgcttcttgga |
688050 |
T |
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| Q |
117 |
attcccttgaacctaaaatatagtaattcaaatagaactcaacactcacat |
167 |
Q |
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| T |
688049 |
attcccttgaacctaaaatatagttattcaaacagaaatcaacactcacat |
687999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 322 - 392
Target Start/End: Complemental strand, 687887 - 687817
Alignment:
| Q |
322 |
ctgcagaacaaattcaggaccattgcaagaatgcaaattggtagtggcaacctccccaccttgaatctctg |
392 |
Q |
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| T |
687887 |
ctgcagaacaaactcaggaccattgcaagaatgcaaattagttgttgcaacctccccaccttgaatctctg |
687817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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