View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9460_low_22 (Length: 348)
Name: NF9460_low_22
Description: NF9460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9460_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 19 - 339
Target Start/End: Original strand, 18218870 - 18219190
Alignment:
| Q |
19 |
gtctctactggaggagaaagatgaggggaaaagggtccagtgacatgtgtcaaagtagttgtgctcacagggcgcctctctgctaatggcttaacaggag |
118 |
Q |
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| T |
18218870 |
gtctctagtggaggagaaagatgaggggaaaagggtccagtgacatgtgtcaaagtagttgtgctcacagggcgcctctctgctaatggcttaacaggag |
18218969 |
T |
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| Q |
119 |
aagatggaataggtatggacaatgacaagttatgagtgttggaatttgagacaagcttgggtgctgaggtggtagatgaggaagctgaggttggggttgg |
218 |
Q |
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| T |
18218970 |
aagatggaataggtatggacaatgacaagttatgagtgttggaatttgagacaagcttgggtgctgaggtggtagatgaggaagctgaggttggggttgg |
18219069 |
T |
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| Q |
219 |
gaccacagtatgttcatcaaggttggttacaacatgtggagacaagctcatgtttggccacataaaggtccctcttggtttgcaaatttggaaaccactt |
318 |
Q |
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| T |
18219070 |
gaccacagtatgttcatcaaggttggttacaacatgtggagacaagctcatgtttggccacataaaggtccctcttggtttgcaaatttggaaaccactt |
18219169 |
T |
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| Q |
319 |
ttcagcctttctatctctgct |
339 |
Q |
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| T |
18219170 |
ttcagcctttctatctttgct |
18219190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 19 - 116
Target Start/End: Original strand, 43010882 - 43010984
Alignment:
| Q |
19 |
gtctctactggaggagaaagatgaggggaaaagggtcca-----gtgacatgtgtcaaagtagttgtgctcacagggcgcctctctgctaatggcttaac |
113 |
Q |
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| T |
43010882 |
gtctctagtggaggagaaagataagtggaaaagggtccaatgacatgacatgtgtcaaagtagttgtgctcacagggcgcctctctgctaatggcttaac |
43010981 |
T |
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| Q |
114 |
agg |
116 |
Q |
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||| |
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| T |
43010982 |
agg |
43010984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 202 - 300
Target Start/End: Original strand, 43010995 - 43011093
Alignment:
| Q |
202 |
gctgaggttggggttgggaccacagtatgttcatcaaggttggttacaacatgtggagacaagctcatgtttggccacataaaggtccctcttggtttg |
300 |
Q |
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||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||| | |||| |||||||||||||||||||| |||| |
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| T |
43010995 |
gctgaggatggggttgggaccacagtgtgttcatcaaggttggttacaacatgtggatacaaactcgtatttgaccacataaaggtccctcttgttttg |
43011093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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