View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9460_low_25 (Length: 258)
Name: NF9460_low_25
Description: NF9460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9460_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 42423777 - 42424000
Alignment:
| Q |
19 |
ccagccacatcaacaagatcattgaataccaaactctctcagacgatggcaaagagaaagaattttccgtcgaggaactgaataacgatgaggtgaaaga |
118 |
Q |
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| T |
42423777 |
ccagccacatcaacaagatcattgaataccaaactctctcagacgatggcaaagagaaagaattttccgtcgaggaactgaataacgatgaggtgaagga |
42423876 |
T |
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| Q |
119 |
gtttcttcttgcagtgcattacttgaatatggagagtctttttgagcttctgactggggttgttgctgatcggattaagaacaagaacgttggttatgtg |
218 |
Q |
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| T |
42423877 |
gtttcttcttgcagtgcattacttgaatatggagagtctttttgagcttctgactggggttgttgctgatcggattaagaacaagaacgttggttatgtg |
42423976 |
T |
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| Q |
219 |
agagagtatttcggtgttgagaat |
242 |
Q |
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|||||||||||||||||||||||| |
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| T |
42423977 |
agagagtatttcggtgttgagaat |
42424000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 23 - 247
Target Start/End: Complemental strand, 6062876 - 6062652
Alignment:
| Q |
23 |
ccacatcaacaagatcattgaataccaaactctctcagacgatggcaaagagaaagaattttccgtcgaggaactgaataacgatgaggtgaaagagttt |
122 |
Q |
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|||||||||||||||| | || |||||||||||||| || || | || | ||| || |||||||||||||| || || ||||||||| |||| |||||| |
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| T |
6062876 |
ccacatcaacaagatcgtcgagtaccaaactctctccgatgacgataaggtgaaggagttttccgtcgaggatctcaacaacgatgagttgaaggagttt |
6062777 |
T |
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| Q |
123 |
cttcttgcagtgcattacttgaatatggagagtctttttgagcttctgactggggttgttgctgatcggattaagaacaagaacgttggttatgtgagag |
222 |
Q |
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| T |
6062776 |
cttcttgctgttcattacttgaatatggagagtctttttgaggttttgactcaggctgttgcggatcggatcaagaataagaatgttgtgtatgtgagaa |
6062677 |
T |
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| Q |
223 |
agtatttcggtgttgagaataatct |
247 |
Q |
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| ||||| ||| | |||||| |||| |
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| T |
6062676 |
actattttggtatcgagaatgatct |
6062652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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