View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9460_low_26 (Length: 254)
Name: NF9460_low_26
Description: NF9460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9460_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 36356979 - 36357230
Alignment:
| Q |
1 |
ttattggatgatcatgtatttgtttaattatttgtttgaaaaacaaaaactttgagatgtaatcatggaaaaaacagagtttgattcctgggtggaacaa |
100 |
Q |
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| T |
36356979 |
ttattggatgatcatgcatttgtttaattatttgtttaaaaaaaaaaaactttgagatgtaatcatgggaaaaacagagtttgattcctgggtggaacaa |
36357078 |
T |
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| Q |
101 |
tcgtcggttagactttgtacctcctggtcgaactctggaatactagggtctcattccacctgagaactggagggttaac-----------nnnnnnnnnc |
189 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
36357079 |
tcgtcggttagactttgtaccttctggtcgaactctggaatactagggtctcattccacctgagaactggagggttaacaaaaagaaaaacaaaaaaaac |
36357178 |
T |
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| Q |
190 |
tgagatgtgaaattgagaggggttttgtttcattgatgaacttggttctgtg |
241 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36357179 |
tgagatgtgaaattgagaggggttttgtttcattgatgaacttggttctgtg |
36357230 |
T |
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