View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9460_low_28 (Length: 252)
Name: NF9460_low_28
Description: NF9460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9460_low_28 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 11 - 252
Target Start/End: Complemental strand, 47836830 - 47836591
Alignment:
| Q |
11 |
agcaaaggcgagaggccaattgtagaaaaacacaactagtttttcgcgatacaaaggctaacatcacttttagaagacaaacttcaaattttaacttcta |
110 |
Q |
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| T |
47836830 |
agcaaaggcgagaggacaattgtagaaaaacacaattagtttttcgcaatacaaaggctaacatcacttttagaagacaaacttcaaattttaacttc-a |
47836732 |
T |
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| Q |
111 |
agtaaaaataaattctacaagcaaaatcaattttccttttaatcatccaacatgataaaatcaattcaacaatcacttttgattctccaaaaatgaaacc |
210 |
Q |
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| T |
47836731 |
agtaaaaataaattctacaagcaaaatcaattttccttttaatcatcaaacatgataaaatcaattcaacaatcactttt-attctccaaaaatgaaacc |
47836633 |
T |
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| Q |
211 |
aaatattatttatttattcattatagataggagttgaaccaa |
252 |
Q |
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| T |
47836632 |
aaatattatttatttattcattatagataggagttgaaccaa |
47836591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 184
Target Start/End: Original strand, 29779138 - 29779202
Alignment:
| Q |
121 |
aattctacaagcaaaatcaattttccttttaatcatcc-aacatgataaaatcaattcaacaatc |
184 |
Q |
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| T |
29779138 |
aattctacaagcaaaatcaattctcttttaaatcatccaaacatgataaaatcaattctacaatc |
29779202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 182
Target Start/End: Original strand, 17898212 - 17898274
Alignment:
| Q |
121 |
aattctacaagcaaaatcaattttccttttaatcatcc-aacatgataaaatcaattcaacaa |
182 |
Q |
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| T |
17898212 |
aattctacaagcaaaatcaattatactttaaaccatccaaacatgatacaatcaattctacaa |
17898274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 121 - 177
Target Start/End: Original strand, 1872308 - 1872365
Alignment:
| Q |
121 |
aattctacaagcaaaatcaattttccttttaatcatcc-aacatgataaaatcaattc |
177 |
Q |
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| T |
1872308 |
aattctacaagcaaaatcaattttcttttaaatcatccaaacatgataaaaacaattc |
1872365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 64 - 106
Target Start/End: Original strand, 11650798 - 11650840
Alignment:
| Q |
64 |
aaggctaacatcacttttagaagacaaacttcaaattttaact |
106 |
Q |
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| T |
11650798 |
aaggctaacatcacttttagaagtcaaactacaaattttaact |
11650840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 182
Target Start/End: Complemental strand, 46870407 - 46870357
Alignment:
| Q |
133 |
aaaatcaattttccttttaatcatccaa-catgataaaatcaattcaacaa |
182 |
Q |
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| T |
46870407 |
aaaatcaattatcctttaaatcatccaaacatgataaaatcaattctacaa |
46870357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 184
Target Start/End: Complemental strand, 1879158 - 1879094
Alignment:
| Q |
121 |
aattctacaagcaaaatcaattttccttttaatcatccaa-catgataaaatcaattcaacaatc |
184 |
Q |
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||||||||||| ||||| |||| || ||| | |||||||| ||||||||||||||||| |||||| |
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| T |
1879158 |
aattctacaagtaaaataaattctcttttaactcatccaaacatgataaaatcaattctacaatc |
1879094 |
T |
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