View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9460_low_31 (Length: 242)
Name: NF9460_low_31
Description: NF9460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9460_low_31 |
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| [»] scaffold0251 (1 HSPs) |
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| [»] chr5 (3 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: scaffold0251 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: scaffold0251
Description:
Target: scaffold0251; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 22 - 242
Target Start/End: Complemental strand, 3040 - 2820
Alignment:
| Q |
22 |
attgtgttatgtgtcaagatccccatgaagacagttatcatattttgtttcattgtaaggcggctgtcaatgtttggaatgcggctaatgtttggcacct |
121 |
Q |
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|||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
3040 |
attgtgttatgtgtgaagatccacatgaagacagttatcatattttgtttcattgtaaggcggctgtcgatgtgtggaatgcggctaatgtttggcacct |
2941 |
T |
|
| Q |
122 |
cgtatctccatctttggacctgtttgataatgcatcagatatcatattccatttgttgcgaatattgtctacaacccagatagagaatattgtcactatt |
221 |
Q |
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||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
2940 |
gatatctccatctttggtcctgtttgataatacatcagatattatattccatttgttgagaatattgtctacaacccagatagagaatattgtcactatt |
2841 |
T |
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| Q |
222 |
atatggagtatctggaaagct |
242 |
Q |
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|| |||||||||||||||||| |
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| T |
2840 |
atttggagtatctggaaagct |
2820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 22 - 242
Target Start/End: Original strand, 8723973 - 8724193
Alignment:
| Q |
22 |
attgtgttatgtgtcaagatccccatgaagacagttatcatattttgtttcattgtaaggcggctgtcaatgtttggaatgcggctaatgtttggcacct |
121 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||| || |
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| T |
8723973 |
attgtgttatgtgtgaagatccccatgaagacagttatcatatcttgtttcactgtaaggcggctgtcgatgtttggaatgcggctaatgtttggcatct |
8724072 |
T |
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| Q |
122 |
cgtatctccatctttggacctgtttgataatgcatcagatatcatattccatttgttgcgaatattgtctacaacccagatagagaatattgtcactatt |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |
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| T |
8724073 |
gatatctccatctttggacctgtttgataatgcatcagatattatattccatttgttgaaaatattgtctacaacccagatagagaatattgtcactact |
8724172 |
T |
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| Q |
222 |
atatggagtatctggaaagct |
242 |
Q |
| |
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||||||||||||||||||||| |
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| T |
8724173 |
atatggagtatctggaaagct |
8724193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 22 - 242
Target Start/End: Complemental strand, 13066246 - 13066027
Alignment:
| Q |
22 |
attgtgttatgtgtcaagatccccatgaagacagttatcatattttgtttcattgtaaggcggctgtcaatgtttggaatgcggctaatgtttggcacct |
121 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||| |||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||| |
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| T |
13066246 |
attgtgttatgtgtgaagatccc-atgaagacaattatcatattttgtttcactgtaaggcagctgtcgatgtttggaatgcggctaatgtttggcacct |
13066148 |
T |
|
| Q |
122 |
cgtatctccatctttggacctgtttgataatgcatcagatatcatattccatttgttgcgaatattgtctacaacccagatagagaatattgtcactatt |
221 |
Q |
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||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
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| T |
13066147 |
gatatctccatctttggtcctgtttgataatgcatcagatattatattccatttgttgagaatattgtctacaacccaaatagagaatattgtcactatt |
13066048 |
T |
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| Q |
222 |
atatggagtatctggaaagct |
242 |
Q |
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|| |||||||||||||||||| |
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| T |
13066047 |
atttggagtatctggaaagct |
13066027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 241
Target Start/End: Original strand, 42764733 - 42764773
Alignment:
| Q |
201 |
atagagaatattgtcactattatatggagtatctggaaagc |
241 |
Q |
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|||||||||||||| |||||||| |||||||| |||||||| |
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| T |
42764733 |
atagagaatattgttactattatgtggagtatatggaaagc |
42764773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 22 - 242
Target Start/End: Original strand, 15789306 - 15789526
Alignment:
| Q |
22 |
attgtgttatgtgtcaagatccccatgaagacagttatcatattttgtttcattgtaaggcggctgtcaatgtttggaatgcggctaatgtttggcacct |
121 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||| |||| |||||||||||||||||||||||||||| || |
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| T |
15789306 |
attgtgttatgtgtgaagatccccatgaagacagttatcatatcttgtttcactgtaaggcggttgtcgatgtttggaatgcggctaatgtttggcatct |
15789405 |
T |
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| Q |
122 |
cgtatctccatctttggacctgtttgataatgcatcagatatcatattccatttgttgcgaatattgtctacaacccagatagagaatattgtcactatt |
221 |
Q |
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| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |
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| T |
15789406 |
gatctctccatctttggacctgtttgataatgcatcagatattatattccatttgttgaaaatattgtctacaacccagatagagaatattgtcactact |
15789505 |
T |
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| Q |
222 |
atatggagtatctggaaagct |
242 |
Q |
| |
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||||||||||||||||||||| |
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| T |
15789506 |
atatggagtatctggaaagct |
15789526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 66 - 242
Target Start/End: Original strand, 13783178 - 13783354
Alignment:
| Q |
66 |
ttgtttcattgtaaggcggctgtcaatgtttggaatgcggctaatgtttggcacctcgtatctccatctttggacctgtttgataatgcatcagatatca |
165 |
Q |
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|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |
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| T |
13783178 |
ttgtttcactgtaaggcggctgtcgatgtttggaatgcggctaatgtttggcacctgatatctccatctttggacctgtttgataatgcatcagatatta |
13783277 |
T |
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| Q |
166 |
tattccatttgttgcgaatattgtctacaacccagatagagaatattgtcactattatatggagtatctggaaagct |
242 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13783278 |
tattccatttgttgagaatattgtctacaacccagatagagaatattgtcactattatatggagtatctggaaagct |
13783354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 33972360 - 33972413
Alignment:
| Q |
23 |
ttgtgttatgtgtcaagatccccatgaagacagttatcatattttgtttcattg |
76 |
Q |
| |
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|||||||| |||| |||| ||||||||||| |||||||||||| | |||||||| |
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| T |
33972360 |
ttgtgttaggtgtgaagacccccatgaagatagttatcatattctctttcattg |
33972413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 24 - 242
Target Start/End: Complemental strand, 20089829 - 20089611
Alignment:
| Q |
24 |
tgtgttatgtgtcaagatccccatgaagacagttatcatattttgtttcattgtaaggcggctgtcaatgtttggaatgcggctaatgtttggcacctcg |
123 |
Q |
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|||||||||||| |||| ||| ||||||| | |||||||| | ||| |||| |||||||| | |||||||||||||||||||||||| |||||| |
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| T |
20089829 |
tgtgttatgtgtgaagacccctatgaagataactatcatatgctcttttattgcaaggcggccattgatgtttggaatgcggctaatgtttagcacctga |
20089730 |
T |
|
| Q |
124 |
tatctccatctttggacctgtttgataatgcatcagatatcatattccatttgttgcgaatattgtctacaacccagatagagaatattgtcactattat |
223 |
Q |
| |
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| ||||||||| || | | |||||||||||||||| |||||||||| || |||| | || |||||||| |||| | |||| |||||| || || || |
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| T |
20089729 |
tctctccatctctgaatcagtttgataatgcatcatatatcatatttaatctgttacaaaagttgtctactgcccaaactgagactattgttaccataat |
20089630 |
T |
|
| Q |
224 |
atggagtatctggaaagct |
242 |
Q |
| |
|
|||||||||||||||||| |
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| T |
20089629 |
gtggagtatctggaaagct |
20089611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 91 - 242
Target Start/End: Original strand, 7994512 - 7994663
Alignment:
| Q |
91 |
atgtttggaatgcggctaatgtttggcacctcgtatctccatctttggacctgtttgataatgcatcagatatcatattccatttgttgcgaatattgtc |
190 |
Q |
| |
|
||||||||||| ||| |||||||||||||| | ||||||||| || | | |||||||||||| | ||||||||||| || | |||| || | || |
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| T |
7994512 |
atgtttggaatatggccaatgtttggcacctgatttctccatctctgaatcaatttgataatgcacccgatatcatatttaatcttttgcaaaagctatc |
7994611 |
T |
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| Q |
191 |
tacaacccagatagagaatattgtcactattatatggagtatctggaaagct |
242 |
Q |
| |
|
|||||||||||| |||| |||||| || || || |||||||||||||||||| |
|
|
| T |
7994612 |
tacaacccagatcgagactattgttaccataatgtggagtatctggaaagct |
7994663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 241
Target Start/End: Original strand, 27071816 - 27071856
Alignment:
| Q |
201 |
atagagaatattgtcactattatatggagtatctggaaagc |
241 |
Q |
| |
|
|||||||||||||| |||||||| |||||||| |||||||| |
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|
| T |
27071816 |
atagagaatattgttactattatgtggagtatatggaaagc |
27071856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 25595615 - 25595563
Alignment:
| Q |
24 |
tgtgttatgtgtcaagatccccatgaagacagttatcatattttgtttcattg |
76 |
Q |
| |
|
|||||||||||| | |||||||| ||||| ||||||||| | ||||||||||| |
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|
| T |
25595615 |
tgtgttatgtgtgaggatccccacgaagatagttatcatttgttgtttcattg |
25595563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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