View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9460_low_35 (Length: 240)
Name: NF9460_low_35
Description: NF9460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9460_low_35 |
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| [»] chr7 (2 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 164; Significance: 9e-88; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 19748527 - 19748750
Alignment:
| Q |
18 |
tgataatatacatggtctcatgtgtaggaatgtgtggttgtaatggttcccttaacagttcctggaaatgtagattaaagttaattaagtggctttgaga |
117 |
Q |
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| T |
19748527 |
tgataatatacctggtctcatgtgtaggaatgtgtggttgtcatggttcccttaacaattcctggaaatatagaccaaagataattaggtggctttgagc |
19748626 |
T |
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| Q |
118 |
taggaatcaa-tgttgctattacaatactagctatccgtttgatgagtatcaaaatttttgcttaccgaattcttcatccaggatcttcacaaagggagc |
216 |
Q |
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|||||||||| ||||| | ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19748627 |
taggaatcaaatgttgttgttacaatactagctatcagtatgatgagtatcaaaatttttgcttaccgaattcttcatccaggatcttcacaaagggagc |
19748726 |
T |
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| Q |
217 |
aagacagtttgtggtgcaagaagc |
240 |
Q |
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| T |
19748727 |
aagacagtttgtggtgcaagaagc |
19748750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 240
Target Start/End: Original strand, 32729665 - 32729726
Alignment:
| Q |
179 |
ttaccgaattcttcatccaggatcttcacaaagggagcaagacagtttgtggtgcaagaagc |
240 |
Q |
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| T |
32729665 |
ttaccgaatttctgatcaaggaccttgacaaagggagcaaggcagttagtggtgcaagaagc |
32729726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 54182005 - 54182228
Alignment:
| Q |
18 |
tgataatatacatggtctcatgtgtaggaatgtgtggttgtaatggttcccttaacagttcctggaaatgtagattaaagttaattaagtggctttgaga |
117 |
Q |
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| T |
54182005 |
tgataatatacctggtctcctgtgtaggaatgtgtggttgtcatggttcccttaacaattcctggaaatatagaccaaagatgattaagtggctttgagc |
54182104 |
T |
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| Q |
118 |
taggaatcaa-tgttgctattacaatactagctatccgtttgatgagtatcaaaatttttgcttaccgaattcttcatccaggatcttcacaaagggagc |
216 |
Q |
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|||||||||| ||||||| ||||||||||||||||| || |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54182105 |
taggaatcaaatgttgctgttacaatactagctatcagtatgatgagtatcagaatatttgcttaccgaattcttcatccaggatcttcacaaagggagc |
54182204 |
T |
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| Q |
217 |
aagacagtttgtggtgcaagaagc |
240 |
Q |
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| T |
54182205 |
aagacagtttgtggtgcaagaagc |
54182228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 6224570 - 6224793
Alignment:
| Q |
18 |
tgataatatacatggtctcatgtgtaggaatgtgtggttgtaatggttcccttaacagttcctggaaatgtagattaaagttaattaagtggctttgaga |
117 |
Q |
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||||||||||| ||||||| ||||||||||||| ||||||| |||||| |||||||| ||| ||||||| |||| || | ||||||||||||||| || |
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| T |
6224570 |
tgataatatacgtggtctcttgtgtaggaatgtatggttgtcatggtttccttaacaattcatggaaatatagaccaacgataattaagtggctttaagc |
6224669 |
T |
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| Q |
118 |
taggaatcaa-tgttgctattacaatactagctatccgtttgatgagtatcaaaatttttgcttaccgaattcttcatccaggatcttcacaaagggagc |
216 |
Q |
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|||||||||| ||||| | ||||||||||||||||| | |||||||||| | || ||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
6224670 |
taggaatcaaatgttgttgttacaatactagctatcaatatgatgagtattagaacttttgcttagcgaattcttcatccaggatcttcacaaagggagc |
6224769 |
T |
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| Q |
217 |
aagacagtttgtggtgcaagaagc |
240 |
Q |
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| T |
6224770 |
aacacagtttgtggtgcaagaagc |
6224793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 42 - 186
Target Start/End: Complemental strand, 28247272 - 28247127
Alignment:
| Q |
42 |
taggaatgtgtggttgtaatggttcccttaacagttcctggaaatgtagattaaagttaattaagtggctttgagataggaatc-aatgttgctattaca |
140 |
Q |
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||||| ||||| ||||| ||||||||||||| | ||||||||||| |||| |||| |||||||||||||||||| |||||||| ||||||||| ||||| |
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| T |
28247272 |
taggactgtgtcgttgtcatggttcccttaaaaattcctggaaatatagaccaaagataattaagtggctttgagctaggaatcaaatgttgctgttaca |
28247173 |
T |
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| Q |
141 |
atactagctatccgtttgatgagtatcaaaatttttgcttaccgaa |
186 |
Q |
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| T |
28247172 |
atactagatatcagtatgatgagtatcagaatttttgcttaccgaa |
28247127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 94 - 240
Target Start/End: Complemental strand, 5076749 - 5076602
Alignment:
| Q |
94 |
aaagttaattaagtggctttgagataggaatcaa-tgttgctattacaatactagctatccgtttgatgagtatcaaaatttttgcttaccgaattcttc |
192 |
Q |
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|||| |||||||||||||||||| |||||||||| ||||| | ||||||||||||||||| || |||||||||||| ||||||||||||||||||| ||| |
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| T |
5076749 |
aaagataattaagtggctttgagctaggaatcaaatgttgttgttacaatactagctatcagtatgatgagtatcagaatttttgcttaccgaatttttc |
5076650 |
T |
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| Q |
193 |
atccaggatcttcacaaagggagcaagacagtttgtggtgcaagaagc |
240 |
Q |
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| T |
5076649 |
atccaggatcttcacacagggagcaagacagtttgcggtgcaggaagc |
5076602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 94 - 232
Target Start/End: Original strand, 7412476 - 7412615
Alignment:
| Q |
94 |
aaagttaattaagtggctttgagataggaatcaa-tgttgctattacaatactagctatccgtttgatgagtatcaaaatttttgcttaccgaattcttc |
192 |
Q |
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|||| |||||||||||||||||| |||||||||| ||||||| ||||||||||||||||| || |||||||||||| ||||||||||||||||||| ||| |
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| T |
7412476 |
aaagataattaagtggctttgagctaggaatcaaatgttgctgttacaatactagctatcagtatgatgagtatcataatttttgcttaccgaatttttc |
7412575 |
T |
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| Q |
193 |
atccaggatcttcacaaagggagcaagacagtttgtggtg |
232 |
Q |
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|||||||||||||||| |||||||||||||||||| |||| |
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| T |
7412576 |
atccaggatcttcacacagggagcaagacagtttgcggtg |
7412615 |
T |
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