View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9460_low_41 (Length: 232)
Name: NF9460_low_41
Description: NF9460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9460_low_41 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 17 - 215
Target Start/End: Complemental strand, 38082495 - 38082297
Alignment:
| Q |
17 |
agaccatattccttctaatccattttcaagaatgggagttttcacaaaatcagattttgctttgtaaataaatcttgggctgtttgcagctagtgttctg |
116 |
Q |
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| T |
38082495 |
agaccatattccttctaatccattttcaggaatgggagttttcacaaaatcagattttgctttgtaaataaatcttgggctgtttgcagctagtgttctg |
38082396 |
T |
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| Q |
117 |
ttaagcaacacttcaggtaatgcacctttcggaaattgaaaaaggtaaagaaccgattcaatccaactcatttcaatacaattttctctgaccacaccc |
215 |
Q |
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| T |
38082395 |
ttaagcaacacttcaggtaatgcacctttcggaaattgaaaaaggtaaagaaccgattcaatccaactcatttcaatacaattttctctgaccacaccc |
38082297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 210
Target Start/End: Complemental strand, 38086920 - 38086739
Alignment:
| Q |
20 |
ccatattccttctaatccattttcaagaatgggagttttcacaaaatcagattttgctttgtaaataaatcttgggctgtttgcagctagtgttctgtta |
119 |
Q |
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| T |
38086920 |
ccatatgccttctaatccagtttcaggaattggaattctcacaaaatcagattttgctttg--aatatatcaag-------tgtagcttgtgttctgtta |
38086830 |
T |
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| Q |
120 |
agcaacacttcaggtaatgcacctttcggaaattgaaaaaggtaaagaaccgattcaatccaactcatttcaatacaattttctctgacca |
210 |
Q |
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| T |
38086829 |
agcaacacttcaggtgtagaaccttttggaaactgaaaaaagtaaagaacagattcaatccaactcatttcaatacaatattctctaacca |
38086739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 99 - 210
Target Start/End: Original strand, 38061448 - 38061559
Alignment:
| Q |
99 |
tttgcagctagtgttctgttaagcaacacttcaggtaatgcacctttcggaaattgaaaaaggtaaagaaccgattcaatccaactcatttcaatacaat |
198 |
Q |
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| T |
38061448 |
tttgcagcttgtgttctgttgagcaacatttcaggtgattcgcctttcggaaatccataaaggtaaagaaccgattcaatccaactcatctcaatacaat |
38061547 |
T |
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| Q |
199 |
tttctctgacca |
210 |
Q |
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|||||| |||| |
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| T |
38061548 |
cttctctaacca |
38061559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 99 - 210
Target Start/End: Complemental strand, 38073340 - 38073229
Alignment:
| Q |
99 |
tttgcagctagtgttctgttaagcaacacttcaggtaatgcacctttcggaaattgaaaaaggtaaagaaccgattcaatccaactcatttcaatacaat |
198 |
Q |
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| T |
38073340 |
tttgcagctagtgttctgttgagcaacgtttcaagtggttcgccttctggaaaccgaaaaaggtaaagaactgattcaatccaactcatttcaacacaat |
38073241 |
T |
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| Q |
199 |
tttctctgacca |
210 |
Q |
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| T |
38073240 |
cttctctaacca |
38073229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 38059076 - 38059010
Alignment:
| Q |
20 |
ccatattccttctaatccattttcaagaatgggagttttcacaaaatcagattttgctttgtaaata |
86 |
Q |
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| T |
38059076 |
ccatattccttctaatccaacttcaggaatgggaattttgacaaaatcagattttactttgtaaata |
38059010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 210
Target Start/End: Complemental strand, 38058948 - 38058895
Alignment:
| Q |
157 |
aaaggtaaagaaccgattcaatccaactcatttcaatacaattttctctgacca |
210 |
Q |
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| T |
38058948 |
aaaggtaaagaactgattcaacccaactcatctcaacacaatcttctctaacca |
38058895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 38073410 - 38073350
Alignment:
| Q |
20 |
ccatattccttctaatccattttcaagaatgggagttttcacaaaatcagattttgctttg |
80 |
Q |
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||||| ||||||||| ||| ||||| |||| ||| |||| |||||||||||||| |||||| |
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| T |
38073410 |
ccataatccttctaaaccagtttcaggaataggaattttgacaaaatcagatttcgctttg |
38073350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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