View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9460_low_43 (Length: 229)
Name: NF9460_low_43
Description: NF9460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9460_low_43 |
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Alignment Details
Target: chr6 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 21185408 - 21185616
Alignment:
| Q |
1 |
tggaaacaactccaaattgaaggtataccactcgaagtattataagtacattaatataacaatataatttgtaaaataaaaaagaannnnnnnnnnnnca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| | |
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| T |
21185408 |
tggaaacaactccaaattgaaggtataccactcgaagtattataagtacattaatatagcaatataatttgtaaaatgaaaaagaaaaagagagag--cg |
21185505 |
T |
|
| Q |
101 |
ataagtaactctaaagcgtaagacaatgagaccctggcttcaacacgacaccaacccatatgtttatactcatgtctgtgtcgtatccatgctagtgtac |
200 |
Q |
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|||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
21185506 |
ataagtaactctaaagcgtaaggcaatgagacccttgcttcaacacgacaccaacccatatgtttatactcatgtctgtgtcgtatccatgccagtgtat |
21185605 |
T |
|
| Q |
201 |
agtgatcatat |
211 |
Q |
| |
|
||||||||||| |
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|
| T |
21185606 |
agtgatcatat |
21185616 |
T |
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