View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9460_low_44 (Length: 222)
Name: NF9460_low_44
Description: NF9460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9460_low_44 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 222
Target Start/End: Original strand, 37119617 - 37119821
Alignment:
| Q |
18 |
ctaatgaaacaatgtacttagcccaatccattccaacagcactaaaagcaactgagaaaggagcatcagtatcaagttctttgtaattctgcataagaca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37119617 |
ctaatgaaacaatgtacttagcccaatccattccaacagcactaaaagcaactgagaaaggagcatcagtatcaagttctttgtaattctgcataagaca |
37119716 |
T |
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| Q |
118 |
aagtgttgctgctagtaagcaatatattgctgttgtaatcgtcattgatccaactagaccgataggaatgtctctaccagggtttttagtttcttcagcc |
217 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37119717 |
aagtgttgctcctagtaagcaatatattgctgttgtaatcgtcattgatccaactagaccgataggaatgtctctaccagggtttttagtttcttcagcc |
37119816 |
T |
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| Q |
218 |
atggt |
222 |
Q |
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||||| |
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| T |
37119817 |
atggt |
37119821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 18 - 222
Target Start/End: Original strand, 37111362 - 37111566
Alignment:
| Q |
18 |
ctaatgaaacaatgtacttagcccaatccattccaacagcactaaaagcaactgagaaaggagcatcagtatcaagttctttgtaattctgcataagaca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||| |
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| T |
37111362 |
ctaatgaaacaatgtacttagcccaatccattccaacagcactaaaagcaacagagaaaggagcatcaacatttagttctttgtaattctgcataagaca |
37111461 |
T |
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| Q |
118 |
aagtgttgctgctagtaagcaatatattgctgttgtaatcgtcattgatccaactagaccgataggaatgtctctaccagggtttttagtttcttcagcc |
217 |
Q |
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| T |
37111462 |
cagtgttgctgccagtaagcaataaattattgttgtaatcgtcattgaaccaactagaccaattggaatgtctctaccagggttcttggtttcttcagcc |
37111561 |
T |
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| Q |
218 |
atggt |
222 |
Q |
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||||| |
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| T |
37111562 |
atggt |
37111566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 20 - 219
Target Start/End: Complemental strand, 37136634 - 37136435
Alignment:
| Q |
20 |
aatgaaacaatgtacttagcccaatccattccaacagcactaaaagcaactgagaaaggagcatcagtatcaagttctttgtaattctgcataagacaaa |
119 |
Q |
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|||| ||||||||| |||||||| || |||||||| |||||| ||||| || || || |||| ||||| | |||||| ||||||||||| || | |
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| T |
37136634 |
aatgcaacaatgtatttagcccatccccatccaacagaactaaatgcaaccgaaaatggtgcattgacatcaattgttttgtagttctgcataaggcata |
37136535 |
T |
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| Q |
120 |
gtgttgctgctagtaagcaatatattgctgttgtaatcgtcattgatccaactagaccgataggaatgtctctaccagggtttttagtttcttcagccat |
219 |
Q |
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|||||| ||||||| |||||||||| || |||| ||||||||| || ||||| |||||||||||||| ||||||||||||||||| || ||||| |
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| T |
37136534 |
gtgttgttgctagtgagcaatatatgaaagtgataattaccattgatcctacaagaccaataggaatgtctctgccagggtttttagtttcctcggccat |
37136435 |
T |
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