View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9460_low_48 (Length: 218)

Name: NF9460_low_48
Description: NF9460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9460_low_48
NF9460_low_48
[»] chr3 (1 HSPs)
chr3 (15-203)||(43733485-43733673)
[»] chr6 (2 HSPs)
chr6 (118-203)||(1170912-1170997)
chr6 (124-203)||(20391696-20391774)
[»] chr5 (2 HSPs)
chr5 (119-203)||(3937084-3937169)
chr5 (133-200)||(39679414-39679484)
[»] chr4 (1 HSPs)
chr4 (119-203)||(45618782-45618867)


Alignment Details
Target: chr3 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 15 - 203
Target Start/End: Original strand, 43733485 - 43733673
Alignment:
Q  15 ttatacttttggtgaaggcgagtttagcgtcctcgacttcgacggaaacagtggggacgacaaggccatgggagttagagaaggagaaatagggacatcg 114  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  43733485 ttatacttttggtgaaggcgcgtttggcgtcctcgacttcgacggaaacagtgcggacgacaaggccatgggagttagagaaggagaaataaggacatcg 43733584  T
Q  115 cagacggcaaggccattagtttaggtttgggattcagtttcgatagccatggagattgttttggtgtttatcttagtgttgttgtttgt 203  Q
    ||||| ||||||||||| |||||||||| |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  43733585 cagacagcaaggccattggtttaggttttggattcagtttcgatagccattaagattgttttggtgtttatcttagtgttgttgtttgt 43733673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 118 - 203
Target Start/End: Complemental strand, 1170997 - 1170912
Alignment:
Q  118 acggcaaggccattagtttaggtttgggattcagtttcgatagccatggagattgttttggtgtttatcttagtgttgttgtttgt 203  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  1170997 acggcaaggccattagtttgggttttggattcagtttcgatagccatggagattgttttggtgtttataatagtgttgttgtttgt 1170912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 124 - 203
Target Start/End: Complemental strand, 20391774 - 20391696
Alignment:
Q  124 aggccattagtttaggtttgggattcagtttcgatagccatggagattgttttggtgtttatcttagtgttgttgtttgt 203  Q
    ||||||||||||| |||| | ||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  20391774 aggccattagtttgggtt-gagattccgtttcgatagctatggagattgttttggtgtttatattagtgttgttgtttgt 20391696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 2e-29; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 119 - 203
Target Start/End: Complemental strand, 3937169 - 3937084
Alignment:
Q  119 cggcaaggccattagtttagg-tttgggattcagtttcgatagccatggagattgttttggtgtttatcttagtgttgttgtttgt 203  Q
    |||||||||||||| |||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  3937169 cggcaaggccattaatttagggtttgggattcagtttcgatagccacggagattggtttggtgtttatcttagtgttgttgtttgt 3937084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 200
Target Start/End: Complemental strand, 39679484 - 39679414
Alignment:
Q  133 gtttaggtttgggattcagtttcgatagccatggagat---tgttttggtgtttatcttagtgttgttgtt 200  Q
    |||| |||||||| ||| |||||||| |||||||||||   |||||| |||||| |||| |||||||||||    
T  39679484 gtttgggtttgggtttctgtttcgatggccatggagattgttgttttagtgtttgtcttggtgttgttgtt 39679414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 119 - 203
Target Start/End: Complemental strand, 45618867 - 45618782
Alignment:
Q  119 cggcaaggccattagtttagg-tttgggattcagtttcgatagccatggagattgttttggtgtttatcttagtgttgttgtttgt 203  Q
    |||||||||||||| |||||| |||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||    
T  45618867 cggcaaggccattaatttagggtttgggattcagtttcgatagccacgaagattgctttggtgtttatcttagtgttgttgtttgt 45618782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University