View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9460_low_5 (Length: 639)
Name: NF9460_low_5
Description: NF9460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9460_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 371; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 21 - 432
Target Start/End: Complemental strand, 2443754 - 2443331
Alignment:
| Q |
21 |
agactgtattccaacgtgttcaaatcttgcatttggaaacgttttggatcacaacgcattcttaaattgtttgttgtgtggcaaaatggaagatatggtg |
120 |
Q |
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| T |
2443754 |
agactgtattccaacgtgttcaaatcttgcatttggaaacgttttggatcacaacgcattcttaaattgtctgttgtgtggcaaaatggaagatatggtg |
2443655 |
T |
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| Q |
121 |
tgtcaaaacgttttgagatggatggattttaattttgttactccccgaatttatttgtgcacttttcttgttggtcggttgaggttaatgagaagaaaat |
220 |
Q |
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| T |
2443654 |
tttcaaaacgttttgagatggatggattttaattttgttactccccgaatttatttgtgcacttttcttgttggtcggttgaggttaatgagaagaaaat |
2443555 |
T |
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| Q |
221 |
ctgaaaggtgcgtggttgatttggcattccaagcttttggtgatttgcagggtgcggaacgaaaggatttgatgcaaccaagtgagggagatt------- |
313 |
Q |
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| T |
2443554 |
ctgaaaggtgcgtggttgatttggcattccaagcttttggtgatttgcagggtgaggaacgaaaggatttgatgcaaccaagtgagggagattgatgaag |
2443455 |
T |
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| Q |
314 |
-----gatgggataaaagtgttatctttgcattagagtttgagtagattgaaaatacatgcgtcaactgctttttaaggttggttgctgtcttgtctttg |
408 |
Q |
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| T |
2443454 |
taattgatgggataaaagtgttatctttgcattagagtttgagtagattgaaaatacatgcgtcaactgctttttaaggttggttgctgtcttgtctttg |
2443355 |
T |
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| Q |
409 |
gggttcggatgtgagctgtcctgg |
432 |
Q |
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| T |
2443354 |
gggttcggatgtgagctgtcctgg |
2443331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 515 - 605
Target Start/End: Original strand, 9603400 - 9603490
Alignment:
| Q |
515 |
ttcatttctgtttcggtacttgagttgataatggtaggctgtgttccgctaatagtgatgtcgcttatatatggcattgtgtaggtctgtg |
605 |
Q |
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| T |
9603400 |
ttcatttctgtttcggtgcttgagttattggcggtaggctatgttcagataatagtgatgtcgcttatatactgcattgtctaggtctgtg |
9603490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 73
Target Start/End: Complemental strand, 12220532 - 12220501
Alignment:
| Q |
42 |
aaatcttgcatttggaaacgttttggatcaca |
73 |
Q |
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| T |
12220532 |
aaatcttgcatttggaaacgttttggatcaca |
12220501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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