View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9460_low_54 (Length: 207)
Name: NF9460_low_54
Description: NF9460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9460_low_54 |
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Alignment Details
Target: chr1 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 16 - 193
Target Start/End: Complemental strand, 5570518 - 5570341
Alignment:
| Q |
16 |
agaccacgaaatggcaggcacgcgaaaatccccttggtaatggttcctcgttcgcttttgagaagtcaatggttaactctgaaattacggcaacagtcgc |
115 |
Q |
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| T |
5570518 |
agaccacgaaatggcaggcacgcaaaaatccccttggcaatggttcctcattcgcttttgagaagtcaatggttaactctgaaattacggcaacagtcgc |
5570419 |
T |
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| Q |
116 |
agcttcacattctgatgcgcctactcatgatgttattgccaatacttttagctttgcaaaatatttcggatgcaattc |
193 |
Q |
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| T |
5570418 |
aacttcacattctgatgcgcctactcatgatgttattgccaatacttttagctttgcaaaatatttcggacgcaattc |
5570341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 40 - 173
Target Start/End: Complemental strand, 25276112 - 25275980
Alignment:
| Q |
40 |
aaaatccccttggtaatggttcctcgttcgcttttgagaagtcaatggttaactctgaaattacggcaacagtcgcagcttcacattctgatgcgcctac |
139 |
Q |
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||||||||||||||| || ||||||| |||||||| | |||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |
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| T |
25276112 |
aaaatccccttggtattgattcctcgctcgctttttacaagtca-tggttaactctgaaattacggcaacagttgcagcttaacattctgatgcgcctac |
25276014 |
T |
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| Q |
140 |
tcatgatgttattgccaatacttttagctttgca |
173 |
Q |
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| T |
25276013 |
tcatgatgttactgccaatacttttagctttgca |
25275980 |
T |
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