View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9461_high_1 (Length: 660)

Name: NF9461_high_1
Description: NF9461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9461_high_1
NF9461_high_1
[»] chr7 (1 HSPs)
chr7 (253-490)||(22009146-22009387)
[»] chr3 (3 HSPs)
chr3 (271-527)||(6750998-6751256)
chr3 (253-527)||(6467273-6467552)
chr3 (204-250)||(28695258-28695304)
[»] chr8 (4 HSPs)
chr8 (271-527)||(6955733-6955974)
chr8 (555-652)||(13075692-13075788)
chr8 (204-250)||(6954979-6955025)
chr8 (40-110)||(13072263-13072331)
[»] chr6 (1 HSPs)
chr6 (304-490)||(19100785-19100972)
[»] chr4 (2 HSPs)
chr4 (271-400)||(8747200-8747330)
chr4 (204-250)||(8746443-8746489)
[»] chr5 (2 HSPs)
chr5 (204-254)||(28802572-28802622)
chr5 (602-648)||(5122421-5122467)
[»] chr2 (2 HSPs)
chr2 (416-490)||(21272145-21272218)
chr2 (278-362)||(21270993-21271078)


Alignment Details
Target: chr7 (Bit Score: 167; Significance: 4e-89; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 253 - 490
Target Start/End: Original strand, 22009146 - 22009387
Alignment:
Q  253 gttgcagctgg-cctggtct--gtaattaatcagattcaatttcacccaagtttctctacttttgttacact-catcagaatatgtgttgctgtttccgg 348  Q
    ||||||||||| ||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||    
T  22009146 gttgcagctgggcctggtctatgtaactaatcagattcaatttcacccaagtttctctacttttgttacactacatcagaatatgtgttgctgttttcgg 22009245  T
Q  349 gacaacattacaccttggatagattgttctaatttgaacatccttctcactaagcctcacacgagttggcaagcaatttcgagctactcgccaaataaag 448  Q
    |||||||||||||| |||| ||||||||| |||||||||| ||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  22009246 gacaacattacaccatggacagattgttccaatttgaacacccttctcgctaagcctcacacgagttggaaagcaattttgagctactcgccaaataaag 22009345  T
Q  449 tttctaacctttggcggtacagctagtttccaaatcgacatc 490  Q
    |||||||||||||| |||||| ||||||||||||| ||||||    
T  22009346 tttctaacctttggtggtacaactagtttccaaattgacatc 22009387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 167; Significance: 4e-89; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 271 - 527
Target Start/End: Original strand, 6750998 - 6751256
Alignment:
Q  271 tgtaattaatcagattcaatttcacccaagtttctctacttttgttacact-catcagaatatgtgttgctgtttccgggacaacattacaccttggata 369  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||  ||||||| |||| |    
T  6750998 tgtaattaatcaaattcaacttcacccaagtttctctacttttgttacaccgcatcagaatatgtgttgctgtttccgggacaatgttacaccatggaca 6751097  T
Q  370 gattgttctaatttgaacatccttctcactaagcctcacacgagttggcaagcaatttcgagctactcgccaaataaagtttctaacctttggcggtaca 469  Q
     ||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6751098 aattgttccaatttgaacacccttctcgctaagcctcacacgagttggcaagcaatttcgagctactcgccaaataaagtttctaacctttggcggtaca 6751197  T
Q  470 gctagtttccaaatcgacatctgatcctcc-cgacctccagccctgcattttctactag 527  Q
     ||||||| |||||||||||||  ||| || | |||||||||| || ||||||||||||    
T  6751198 actagttttcaaatcgacatctagtccccctcaacctccagccttggattttctactag 6751256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 253 - 527
Target Start/End: Complemental strand, 6467552 - 6467273
Alignment:
Q  253 gttgcagctgg-cctggtct--gtaattaatcagattcaatttcacccaagtttctctacttttgttacact-catcagaatatgtgttgctgtttccgg 348  Q
    ||||||||||| ||||||||  ||||||||||| |||||| ||||||||||||||||||||||||||||||  ||||||||||||||||| |||||||||    
T  6467552 gttgcagctgggcctggtctatgtaattaatcaaattcaacttcacccaagtttctctacttttgttacaccgcatcagaatatgtgttgttgtttccgg 6467453  T
Q  349 gacaacattacaccttggatagattgttctaatttgaacatccttctcactaagcctcacacgagttggcaagcaatttcgagctactcgccaaataaag 448  Q
    |||||| ||||||| |||| | ||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||     
T  6467452 gacaacgttacaccatggacaaattgttccaatttgaacacccttctcgctaagcctcacacgagttggcaagcaatttcgagctactcgccaaataaaa 6467353  T
Q  449 tttctaacctttggcggtacagctagtttccaaatcgacatctgatcctcc-cgacctccagccctgcattttctactag 527  Q
    |||||||||||||| |||||| |||||||||||||||||||||  ||| || | |||||||||| || ||||||||||||    
T  6467352 tttctaacctttggtggtacaactagtttccaaatcgacatctagtccccctcaacctccagccttggattttctactag 6467273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 204 - 250
Target Start/End: Complemental strand, 28695304 - 28695258
Alignment:
Q  204 aaaaggtactaattcatttcatcaaaaatcaaaggatcaatacaatc 250  Q
    ||||| ||| |||||||||||| |||||||||||||||| |||||||    
T  28695304 aaaagatacgaattcatttcattaaaaatcaaaggatcactacaatc 28695258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 111; Significance: 1e-55; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 271 - 527
Target Start/End: Original strand, 6955733 - 6955974
Alignment:
Q  271 tgtaattaatcagattcaatttcacccaagtttctctacttttgttacact-catcagaatatgtgttgctgtttccgggacaacattacaccttggata 369  Q
    ||||||||||||||| ||| |||||||||  |||||||||||||||||||| ||||||||||||||||| |||||||||||||                     
T  6955733 tgtaattaatcagatccaacttcacccaacattctctacttttgttacactgcatcagaatatgtgttgttgtttccgggaca----------------- 6955815  T
Q  370 gattgttctaatttgaacatccttctcactaagcctcacacgagttggcaagcaatttcgagctactcgccaaataaagtttctaacctttggcggtaca 469  Q
    |||||||| |||||||| | ||||||| |||||||||||  ||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||    
T  6955816 gattgttccaatttgaatacccttctcgctaagcctcacgtgagttggcaagcaatttcgagctactcaccaaacaaagtttctaacctttggtggtaca 6955915  T
Q  470 gctagtttccaaatcgacatctgatcctcc-cgacctccagccctgcattttctactag 527  Q
    ||||||||||||||||| |||  |||| || |||||||||||||| |||||||||||||    
T  6955916 gctagtttccaaatcgaaatccaatccccctcgacctccagccctacattttctactag 6955974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 555 - 652
Target Start/End: Complemental strand, 13075788 - 13075692
Alignment:
Q  555 ctgatttatttcggttactataaatttcattataattatgttacggggtaaccttatgtgtcttagcaatgaagctttgtcactaacccgtctctgct 652  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| || ||| |||||||||||    
T  13075788 ctgatttatttcggttactataaatttcattataattatgttac-gggtaaccttatgtgtctcagcaatgaagctttgccattaatccgtctctgct 13075692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 204 - 250
Target Start/End: Original strand, 6954979 - 6955025
Alignment:
Q  204 aaaaggtactaattcatttcatcaaaaatcaaaggatcaatacaatc 250  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||    
T  6954979 aaaaggtactaattcatttcattaaaaatcaaaggatcaatataatc 6955025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 40 - 110
Target Start/End: Complemental strand, 13072331 - 13072263
Alignment:
Q  40 ttagatctattgttatgctgagggatatggttttatgatatgctatgtacccaaattttgagcagcaaata 110  Q
    |||||||||||||||||||||||||||||||||| ||  |||| ||||  ||||| ||||| |||||||||    
T  13072331 ttagatctattgttatgctgagggatatggttttgtg--atgccatgtgtccaaaatttgaacagcaaata 13072263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 108; Significance: 7e-54; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 304 - 490
Target Start/End: Original strand, 19100785 - 19100972
Alignment:
Q  304 ctctacttttgttacact-catcagaatatgtgttgctgtttccgggacaacattacaccttggatagattgttctaatttgaacatccttctcactaag 402  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| | |  ||||||||| |||||||||| | |||   |||||    
T  19100785 ctctacttttgttacactgcatcagaatatgtgttgttgtttccgggacaacattacaccattgtcagattgttccaatttgaacaccgttcctgctaag 19100884  T
Q  403 cctcacacgagttggcaagcaatttcgagctactcgccaaataaagtttctaacctttggcggtacagctagtttccaaatcgacatc 490  Q
    || ||||||||||||||||| ||||||||||| || ||||||||||||| |||||||||  |||||||||||||||||||||||||||    
T  19100885 ccacacacgagttggcaagcgatttcgagctattcaccaaataaagtttttaacctttgatggtacagctagtttccaaatcgacatc 19100972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 95; Significance: 4e-46; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 271 - 400
Target Start/End: Original strand, 8747200 - 8747330
Alignment:
Q  271 tgtaattaatcagattcaatttcacccaagtttctctacttttgttacact-catcagaatatgtgttgctgtttccgggacaacattacaccttggata 369  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |    
T  8747200 tgtaattaatcagatccaacttcacccaagtttctctacttttgttacactgcatcagaatatgtgttgctgtttccgggacaacattacaccatggaca 8747299  T
Q  370 gattgttctaatttgaacatccttctcacta 400  Q
     ||||||| |||||||||| |||||||||||    
T  8747300 aattgttccaatttgaacacccttctcacta 8747330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 204 - 250
Target Start/End: Original strand, 8746443 - 8746489
Alignment:
Q  204 aaaaggtactaattcatttcatcaaaaatcaaaggatcaatacaatc 250  Q
    |||||||||| ||||||||||| |||| | |||||||||||||||||    
T  8746443 aaaaggtactgattcatttcattaaaatttaaaggatcaatacaatc 8746489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 28802572 - 28802622
Alignment:
Q  204 aaaaggtactaattcatttcatcaaaaatcaaaggatcaatacaatcgggt 254  Q
    |||| ||||||||| ||||||| ||||||||||||||||||||||||||||    
T  28802572 aaaatgtactaatttatttcattaaaaatcaaaggatcaatacaatcgggt 28802622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 602 - 648
Target Start/End: Original strand, 5122421 - 5122467
Alignment:
Q  602 gtaaccttatgtgtcttagcaatgaagctttgtcactaacccgtctc 648  Q
    |||||||||||||||| | |||||||||||||||||||| |||||||    
T  5122421 gtaaccttatgtgtctcaacaatgaagctttgtcactaatccgtctc 5122467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 416 - 490
Target Start/End: Original strand, 21272145 - 21272218
Alignment:
Q  416 ggcaagcaatttcgagctactcgccaaataaagtttctaacctttggcggtacagctagtttccaaatcgacatc 490  Q
    ||||||||||||| |||||   |||||| ||| |||||||||||||| ||||||||||||||| ||||| |||||    
T  21272145 ggcaagcaatttcaagctaggtgccaaacaaa-tttctaacctttggtggtacagctagtttctaaatcaacatc 21272218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 278 - 362
Target Start/End: Original strand, 21270993 - 21271078
Alignment:
Q  278 aatcagattcaatttcacccaagtttctctacttttgttacact-catcagaatatgtgttgctgtttccgggacaacattacacc 362  Q
    ||||||||| | |||||| ||||||  |||||||||||| || | ||||||||||||||  ||||||||||||||| |||| ||||    
T  21270993 aatcagattaagtttcactcaagttaatctacttttgttgcattgcatcagaatatgtgccgctgtttccgggacatcattgcacc 21271078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University