View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9461_high_11 (Length: 398)
Name: NF9461_high_11
Description: NF9461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9461_high_11 |
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Alignment Details
Target: chr6 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 6 - 387
Target Start/End: Complemental strand, 3316903 - 3316522
Alignment:
| Q |
6 |
ataaggcattattacaaaataaatacatcaagcatacatgggaaaccgtaaatgtagcttagaaagaaagagcaattagaattgtgaaaaagcatgtggg |
105 |
Q |
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|||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3316903 |
ataaggcattattacaaaataaatacatgaagcatacatggcaaattgtaaatgtagcttagaaagaaagagcaattagaattgtgaaaaagcatgtggg |
3316804 |
T |
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| Q |
106 |
actttggtggaaaacttcaacaacataacatgcttataaggcttttcttttgtaacaatagttgaaggaaaattaggatgattaacagaatcaggaaaag |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3316803 |
actttggtggaaaacttcaacaacataacatgcttataaggcttttcttttgtaacaatagttgaaggaaaattaggatgattaacagaatcaggaaaag |
3316704 |
T |
|
| Q |
206 |
cttgactctccaaacaaagtgcagaacgtggttgataaacaaaccctccttttcccttatcattcttcacaaaattagcactataaaattgcaatcccgg |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3316703 |
cttgactctccaaacaaagtgcagaacgtggttgataaacaaaccctccttttcccttatcattcttcacaaaattagcactataaaattgcaatcccgg |
3316604 |
T |
|
| Q |
306 |
tgcattagtactaagcttcataactctacctgatttcttatccataactatagctgcaacctttaatccttctttgttctct |
387 |
Q |
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| T |
3316603 |
tgcattagtactaagcttcataactctacctgatttcttatccataactatagctgcaacctttaatccttctttgttctct |
3316522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 72 - 387
Target Start/End: Complemental strand, 3324147 - 3323832
Alignment:
| Q |
72 |
aaagagcaattagaattgtgaaaaagcatgtgggactttggtggaaaacttcaacaacataacatgcttataaggcttttcttttgtaacaatagttgaa |
171 |
Q |
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| T |
3324147 |
aaagagtaattagaattgtgagaaagcatgtggaacattggtggaaaacttcaacaacataacatgcttgtaaggcttttcttttgtaacaatagttgaa |
3324048 |
T |
|
| Q |
172 |
ggaaaattaggatgattaacagaatcaggaaaagcttgactctccaaacaaagtgcagaacgtggttgataaacaaaccctccttttcccttatcattct |
271 |
Q |
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||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3324047 |
ggaaattttggatgattaacagaatcaggaaaagcttgactctccaaacaaagtgcagaacgtggttgataaacaaaccctccttttcccttatcattct |
3323948 |
T |
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| Q |
272 |
tcacaaaattagcactataaaattgcaatcccggtgcattagtactaagcttcataactctacctgatttcttatccataactatagctgcaacctttaa |
371 |
Q |
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||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
3323947 |
tcacaaaattagcactataaaattgcaatccaggagcattagtactaagcttcataactctccctgatttcttatccataactatagctgcaacctttaa |
3323848 |
T |
|
| Q |
372 |
tccttctttgttctct |
387 |
Q |
| |
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||||||||| |||||| |
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| T |
3323847 |
tccttcttttttctct |
3323832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 135 - 221
Target Start/End: Complemental strand, 2299748 - 2299662
Alignment:
| Q |
135 |
atgcttataaggcttttcttttgtaacaatagttgaaggaaaattaggatgattaacagaatcaggaaaagcttgactctccaaaca |
221 |
Q |
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|||||||||||| |||||| || || || |||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
2299748 |
atgcttataaggtttttctggagtcacgattgttgaaggaaaattaggatgattaactgaatcaggaaaagcttgactttccaaaca |
2299662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 323
Target Start/End: Original strand, 18635485 - 18635543
Alignment:
| Q |
265 |
tcattcttcacaaaattagcactataaaattgcaatcccggtgcattagtactaagctt |
323 |
Q |
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||||| |||||||| |||||||||||||||| |||||| | ||||||||||||||||| |
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| T |
18635485 |
tcattattcacaaacttagcactataaaattacaatccagaagcattagtactaagctt |
18635543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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