View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9461_high_17 (Length: 339)
Name: NF9461_high_17
Description: NF9461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9461_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 10 - 260
Target Start/End: Complemental strand, 32753199 - 32752950
Alignment:
| Q |
10 |
tgccttgtgttaatggagctcagctttcaaattatgctactagaccc--acaaatggcaccattatgcttttcatttgtcatcttttatttatagctggt |
107 |
Q |
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| T |
32753199 |
tgccttgtgttaatggagctcagctttcaaattatgctactaaacccccacaaatggcaccattatgcttttcatttgtcatcttttatttatagctggt |
32753100 |
T |
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| Q |
108 |
tatatgctgctaagtggatctgtcttctgcgattctcctgatgtgaagcgactgcagcaaacaatttcctttgnnnnnnncaatgtggaaaacaaacaaa |
207 |
Q |
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| T |
32753099 |
tatatgct---aagtggatctgtcttctgcgattctcctgatgtgaagcgactgcagcaaacaatttccattgtttttatcaatgaggaaaacaaacaaa |
32753003 |
T |
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| Q |
208 |
ataacaataattggtcaacaatggaatctataatcccagttaatgcaccgtag |
260 |
Q |
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| T |
32753002 |
ataacaataattggtcaacaatggaatctataatcccagttaatgcaccgtag |
32752950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 270 - 320
Target Start/End: Complemental strand, 32752892 - 32752842
Alignment:
| Q |
270 |
tcaatttgaggcagagtgaatcagatgcataatgttagttgctcacgtctt |
320 |
Q |
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| T |
32752892 |
tcaatttgaggcagagtgaatcagatgcataatgttagttgctcacgtctt |
32752842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 96 - 180
Target Start/End: Original strand, 3282423 - 3282504
Alignment:
| Q |
96 |
tttatagctggttatatgctgctaagtggatctgtcttctgcgattctcctgatgtgaagcgactgcagcaaacaatttcctttg |
180 |
Q |
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| T |
3282423 |
tttatagctggctatatgct---aagtggatctgtcttccgcgattctcctgatgtaaagccactacaacgaacaatttcctttg |
3282504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 3281928 - 3281965
Alignment:
| Q |
13 |
cttgtgttaatggagctcagctttcaaattatgctact |
50 |
Q |
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| T |
3281928 |
cttgtgttagtggagctcagctctcaaattatgctact |
3281965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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