View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9461_high_20 (Length: 331)

Name: NF9461_high_20
Description: NF9461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9461_high_20
NF9461_high_20
[»] chr8 (1 HSPs)
chr8 (1-331)||(15196229-15196565)
[»] chr6 (2 HSPs)
chr6 (72-162)||(11968810-11968899)
chr6 (93-164)||(6500380-6500451)
[»] chr4 (2 HSPs)
chr4 (57-147)||(8998938-8999028)
chr4 (57-145)||(39082257-39082345)
[»] chr3 (2 HSPs)
chr3 (85-178)||(40147524-40147617)
chr3 (101-177)||(8102323-8102399)
[»] scaffold0190 (1 HSPs)
scaffold0190 (28-147)||(4354-4473)
[»] chr7 (2 HSPs)
chr7 (261-292)||(18121897-18121928)
chr7 (112-178)||(8936278-8936344)


Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 15196229 - 15196565
Alignment:
Q  1 ttccccattgttcagtatttacgata------ttgatattggttggggaagtccagtggcgattcgaagtggtagttcaaataaaagtaatggaaagatt 94  Q
    ||||||||||||||||||||| ||||      |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  15196229 ttccccattgttcagtatttatgatattgatattgatattggttggggaagtcctgtggcgattcgaagtggtagttcaaataaaagtaatggaaagatt 15196328  T
Q  95 agtgtgtttgctggtaaagaagaaggaagtatggactttgaagtttgtcttccatacaagattttggaagtcatgggaaatgactctgagttaaacatga 194  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||    
T  15196329 agtgtgtttgctggtaaagaagaaggaagtatggactttgaagtgtgtcttccatacaagattttggaggtcatgggaaatgaccctgacttaaacatga 15196428  T
Q  195 ctgatgcatccatttggaacctcgatcctctgcaaccttcattacttcgcagtcggttgtaggctgttacatactccctccgtccctatatgtaagcann 294  Q
    |||||||||||| ||||||||| |||||||| |||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||      
T  15196429 ctgatgcatccacttggaaccttgatcctctacaaccttcatcactttgcagtcggctgtaggctgttacatactccctccgtccctatatgtaagcatc 15196528  T
Q  295 nnnnncttctaataaaaatgtgtttagatatagggac 331  Q
         ||||||||||||  ||| ||||||||||||||    
T  15196529 tttttcttctaataaaagggtgcttagatatagggac 15196565  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 72 - 162
Target Start/End: Complemental strand, 11968899 - 11968810
Alignment:
Q  72 caaataaaagtaatggaaagattagtgtgtttgctggtaaagaagaaggaagtatggactttgaagtttgtcttccatacaagattttgga 162  Q
    |||||||||  ||||||||||||||||| ||| ||| |  ||||||||| ||||| ||||||||||| |||||||| ||||||||||||||    
T  11968899 caaataaaaaaaatggaaagattagtgtctttcctg-tgtagaagaaggtagtatagactttgaagtgtgtcttccttacaagattttgga 11968810  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 93 - 164
Target Start/End: Complemental strand, 6500451 - 6500380
Alignment:
Q  93 ttagtgtgtttgctggtaaagaagaaggaagtatggactttgaagtttgtcttccatacaagattttggaag 164  Q
    ||||||| |||||||| |||||| |||| ||||| ||| || ||||||||||||| ||||||| ||||||||    
T  6500451 ttagtgtatttgctggaaaagaataaggtagtatagaccttcaagtttgtcttccttacaagactttggaag 6500380  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 57 - 147
Target Start/End: Complemental strand, 8999028 - 8998938
Alignment:
Q  57 ttcgaagtggtagttcaaataaaagtaatggaaagattagtgtgtttgctggtaaagaagaaggaagtatggactttgaagtttgtcttcc 147  Q
    |||||||||| | |||||||||||| |||||||| |||| ||||||| |||||| |||| |||| | |||||| |||||||| ||||||||    
T  8999028 ttcgaagtggcacttcaaataaaagcaatggaaaaattactgtgtttcctggtacagaaaaaggtattatggattttgaagtgtgtcttcc 8998938  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 145
Target Start/End: Complemental strand, 39082345 - 39082257
Alignment:
Q  57 ttcgaagtggtagttcaaataaaagtaatggaaagattagtgtgtttgctggtaaagaagaaggaagtatggactttgaagtttgtctt 145  Q
    ||||||||||  ||||||||||||||||||| ||||||| ||||| ||||||    |||||||| || || ||  ||||||||||||||    
T  39082345 ttcgaagtgggggttcaaataaaagtaatgggaagattactgtgtatgctggagctgaagaaggtagcattgatattgaagtttgtctt 39082257  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 85 - 178
Target Start/End: Original strand, 40147524 - 40147617
Alignment:
Q  85 tggaaagattagtgtgtttgctggtaaagaagaaggaagtatggactttgaagtttgtcttccatacaagattttggaagtcatgggaaatgac 178  Q
    ||||| ||||| ||| |||||||| ||||||||||| || ||||||||| |||| ||||||||  ||||||||||||| |  ||||||||||||    
T  40147524 tggaatgattactgtatttgctggaaaagaagaaggtagcatggactttcaagtgtgtcttcctcacaagattttggaggcaatgggaaatgac 40147617  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 177
Target Start/End: Complemental strand, 8102399 - 8102323
Alignment:
Q  101 tttgctggtaaagaagaaggaagtatggactttgaagtttgtcttccatacaagattttggaagtcatgggaaatga 177  Q
    |||||||| | ||||||||| ||||||||| || |||| ||||||||  ||||||||||||| |  |||||||||||    
T  8102399 tttgctggaatagaagaaggtagtatggaccttcaagtatgtcttcctcacaagattttggaggcaatgggaaatga 8102323  T

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Target: scaffold0190 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 147
Target Start/End: Complemental strand, 4473 - 4354
Alignment:
Q  28 tgatattggttggggaagtccagtggcgattcgaagtggtagttcaaataaaagtaatggaaagattagtgtgtttgctggtaaagaagaaggaagtatg 127  Q
    |||| ||||||||||||  || |||| | ||||||||||  ||||||||||||| ||||||||||||  ||||| ||| |||  |||||| || || |||    
T  4473 tgattttggttggggaaaacctgtgggggttcgaagtgggggttcaaataaaagaaatggaaagatttatgtgtatgcaggtgtagaagatggtagcatg 4374  T
Q  128 gactttgaagtttgtcttcc 147  Q
    ||| ||||||| ||||||||    
T  4373 gaccttgaagtatgtcttcc 4354  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 261 - 292
Target Start/End: Original strand, 18121897 - 18121928
Alignment:
Q  261 ttacatactccctccgtccctatatgtaagca 292  Q
    ||||||||||||||||||||||||||||||||    
T  18121897 ttacatactccctccgtccctatatgtaagca 18121928  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 178
Target Start/End: Original strand, 8936278 - 8936344
Alignment:
Q  112 agaagaaggaagtatggactttgaagtttgtcttccatacaagattttggaagtcatgggaaatgac 178  Q
    ||||||||| ||||| ||| || ||||||||||||||||  |||||||||| |  ||||||||||||    
T  8936278 agaagaaggtagtattgaccttcaagtttgtcttccatatgagattttggaggcaatgggaaatgac 8936344  T

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