View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9461_high_3 (Length: 527)
Name: NF9461_high_3
Description: NF9461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9461_high_3 |
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| [»] scaffold0174 (2 HSPs) |
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Alignment Details
Target: scaffold0174 (Bit Score: 193; Significance: 1e-104; HSPs: 2)
Name: scaffold0174
Description:
Target: scaffold0174; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 18 - 387
Target Start/End: Original strand, 31578 - 31937
Alignment:
| Q |
18 |
acttatggatttaaacataacagtataagtggtacaatctatggatactgatgaaagaaaatttaattcaaggggaaaatggtgatannnnnnnnnnnnn |
117 |
Q |
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| T |
31578 |
acttatggatttaaacgtaatagtataagtggtacaatctatggatactgatgaaagaaaatttaattcaagggaaaaatggtgatattttttttt---- |
31673 |
T |
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| Q |
118 |
naagcaaccaaaatatcctaccaaaattgatatctggaaaatcgaaccgagactacgagaagaacacttcaaggtttcaagttaacaccatatcaattca |
217 |
Q |
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| T |
31674 |
-aagaaaccaaaatattctaccaaaattggcatagggaaaatcgaactgagaccatgaaaacaacactccaaggtcctaaattaacaccatatcaattca |
31772 |
T |
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| Q |
218 |
agtggattaaacggttatattattaaatactagacatgaattaagataaagtgcatgcttttcttagacatatcgactaaaattcacacataattttttg |
317 |
Q |
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| T |
31773 |
agtggattaaacggttatattattaaata----acatgaattaagataaagtgcatgcttttcttagacatatcgactaaaattcacacttaattttttg |
31868 |
T |
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| Q |
318 |
ttttcattgatgttccatgagccctccatttattttannnnnnnggctcttccttctccttatcccaaac |
387 |
Q |
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| T |
31869 |
ttttcattgatgttccatgagccctccatatattttattttttt-gctcttccttctccttatcccaaac |
31937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0174; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 460 - 527
Target Start/End: Original strand, 32011 - 32078
Alignment:
| Q |
460 |
acgtccatagttttgtcctcttcccgaactgtattcagtccctcctcccgaaccgccttcatttcgtc |
527 |
Q |
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| T |
32011 |
acgtccatagttttgtcctcttcccgaactgtattcagtccctcctcccaaaccggcttcatttcgtc |
32078 |
T |
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