View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9461_high_37 (Length: 245)
Name: NF9461_high_37
Description: NF9461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9461_high_37 |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 36226074 - 36225843
Alignment:
| Q |
1 |
tggtgttcaacgataagagggttgatgatcttttccaattgaagatgtcggtgtgtatctctgatgattttgatattaggcaaacccattttcatgccca |
100 |
Q |
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| T |
36226074 |
tggtgttcaacgataagagggttgatgatcttttccaattgaagatgtgggtgtgtatctctgatgattttgatattaggcaaacccattttcatgccca |
36225975 |
T |
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| Q |
101 |
tatttatgtggtaatttg-aaaataagaggacaagaaagacaaaggaagacaaaaataagaacaaggttcatgcatctatagattgatgctacttgcaaa |
199 |
Q |
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| T |
36225974 |
tatttatgtggtaatttggaaaataagaggacaagaaagacaaaggaagacaaaaataagaacaaggttcatgcatctatagattgatgctacttgcaaa |
36225875 |
T |
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| Q |
200 |
ggtttgacagttagattatgctgccaacttcc |
231 |
Q |
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| T |
36225874 |
ggtttgacagttagattatgctgccaacttcc |
36225843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 36221493 - 36221573
Alignment:
| Q |
1 |
tggtgttcaacgataagagggttgatgatcttttccaattgaagatgtcggtgtgtatctctgatgattttgatattaggc |
81 |
Q |
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| T |
36221493 |
tggtgttcaatgataagaggatagatgatattttccaattgaagatttgggtgtgtgtctccaatgattttgatattaggc |
36221573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 70
Target Start/End: Complemental strand, 35977632 - 35977564
Alignment:
| Q |
2 |
ggtgttcaacgataagagggttgatgatcttttccaattgaagatgtcggtgtgtatctctgatgattt |
70 |
Q |
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| T |
35977632 |
ggtgttcaatgataagaggatggatcaacttttccagttgaagatgtgggtgtgtatctctgatgattt |
35977564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 70
Target Start/End: Complemental strand, 35999044 - 35998976
Alignment:
| Q |
2 |
ggtgttcaacgataagagggttgatgatcttttccaattgaagatgtcggtgtgtatctctgatgattt |
70 |
Q |
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| T |
35999044 |
ggtgttcaatgataagaggatggatcaacttttccagttgaagatgtgggtgtgtatctctgatgattt |
35998976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 70
Target Start/End: Complemental strand, 35958177 - 35958109
Alignment:
| Q |
2 |
ggtgttcaacgataagagggttgatgatcttttccaattgaagatgtcggtgtgtatctctgatgattt |
70 |
Q |
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| T |
35958177 |
ggtgttcaatgataagaggatggatcaacttttccagttgaagatgtgggtgtgtatctccgatgattt |
35958109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 35939520 - 35939439
Alignment:
| Q |
1 |
tggtgttcaacgataagagggttgatgatcttttccaattgaagatgtcggtgtgtatctctgatgattttgatattaggca |
82 |
Q |
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| T |
35939520 |
tggtgttcaatgataagagggtgaatcaacttttccaattgaagatgtggttgtgtgtctccaatgagtttgatatcaggca |
35939439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 70
Target Start/End: Complemental strand, 35946972 - 35946904
Alignment:
| Q |
2 |
ggtgttcaacgataagagggttgatgatcttttccaattgaagatgtcggtgtgtatctctgatgattt |
70 |
Q |
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| T |
35946972 |
ggtgttcaatgataagaggatacatcaacttttccagttgaagatgtgggtgtgtatctccgatgattt |
35946904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 84
Target Start/End: Complemental strand, 18125881 - 18125803
Alignment:
| Q |
6 |
ttcaacgataagagggttgatgatcttttccaattgaagatgtcggtgtgtatctctgatgattttgatattaggcaaa |
84 |
Q |
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| T |
18125881 |
ttcaatgataagagaatagatgaactctttcaattgaagatgtgggtgtgtgtctctgataattttgacatcaggcaaa |
18125803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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