View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9461_high_4 (Length: 513)
Name: NF9461_high_4
Description: NF9461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9461_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 434; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 1 - 494
Target Start/End: Original strand, 38120834 - 38121327
Alignment:
| Q |
1 |
atctcaaccattggcttgacctgaggcatgggagacacacctgctgcagcagtgacatcagcagcacaatcaccacgtccatcaagagcagagcaggatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||| || |
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|
| T |
38120834 |
atctcaaccattggcttgacctgaggcatgggagacacacctgctgcagtagtgacatcagcagcacaaccaccacgtccatcaggagcagagcaggttt |
38120933 |
T |
|
| Q |
101 |
cttccgtcgcctgaccagcagaatctgatacagtagcagctctggctccgacacccgctccttccgatgctccttcacctcctaagatagtatcataagc |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38120934 |
cttccgtggcctgaccagcagaatctgatacagtagcagctctggctccgacacccgctccttccgatgctccttcacctcctaagatagtatcataagc |
38121033 |
T |
|
| Q |
201 |
agccgcaataggattgatatgcggaaaaggcaaatacacgctgtgcacaacaatcttcacattgcggatgacgtcagcaaccttaactctcacatagtta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38121034 |
agccgcaataggattgatatgcggaaaaggcaaatacacgctgtgcacaacaatcttcacattgcggatgacgtcagcaaccttaactctcacatagtta |
38121133 |
T |
|
| Q |
301 |
atcctcattggcgctgatgccactcctccaccggaagtagtgatcagaagcggctgacctcgctccaatgtaggcagagcagttccaactggaagctttt |
400 |
Q |
| |
|
|||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
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|
| T |
38121134 |
atcctcatcggcgctgatgtcactcctccgccggaagtagtgatcagaagcggctgacctcgctccaatgtaggcagagcagttccaaccggaagcttct |
38121233 |
T |
|
| Q |
401 |
caagatcagcgatagacaagtaatgattcggtatgatatggaatcgcacattgctgatgtacgattgagagccagagaatatagaaagatcatc |
494 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||| |
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|
| T |
38121234 |
caagatcggcgattgacaagtaatgattcggtatgatatggaatcgcacattgctgatatacgattgagaaccggagaatatagaaagatcatc |
38121327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 494
Target Start/End: Complemental strand, 38609289 - 38608796
Alignment:
| Q |
1 |
atctcaaccattggcttgacctgaggcatgggagacacacctgctgcagcagtgacatcagcagcacaatcaccacgtccatcaagagcagagcaggatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||| ||||||||||||||||||||||||||| || |
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|
| T |
38609289 |
atctcaaccattggcttgacctgaggcatgggagacacacctgctgtagtagtgacaccagcagcacaaccaccacgtccatcaagagcagagcaggttt |
38609190 |
T |
|
| Q |
101 |
cttccgtcgcctgaccagcagaatctgatacagtagcagctctggctccgacacccgctccttccgatgctccttcacctcctaagatagtatcataagc |
200 |
Q |
| |
|
|||||||||||||||| | ||||||| ||| ||| | |||| |||||| ||||| ||||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
38609189 |
cttccgtcgcctgacctggagaatctaataaagttgatgctccggctccaacacctgctccttccgacgctccttcacctcctaatatagtatcataagc |
38609090 |
T |
|
| Q |
201 |
agccgcaataggattgatatgcggaaaaggcaaatacacgctgtgcacaacaatcttcacattgcggatgacgtcagcaaccttaactctcacatagtta |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38609089 |
agccgcaataggattgatatgcggaaaaggcaaatacacactgtgcacaactatcttcacattgcggatgacgtcagcaaccttaactctcacatagtta |
38608990 |
T |
|
| Q |
301 |
atcctcattggcgctgatgccactcctccaccggaagtagtgatcagaagcggctgacctcgctccaatgtaggcagagcagttccaactggaagctttt |
400 |
Q |
| |
|
|||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
38608989 |
atcctcatcggcgctgatgtcactcctccgccggaagtagtgatcagaagcggctgacctcgctccaatgtaggcagagcagttccaactggaagcttct |
38608890 |
T |
|
| Q |
401 |
caagatcagcgatagacaagtaatgattcggtatgatatggaatcgcacattgctgatgtacgattgagagccagagaatatagaaagatcatc |
494 |
Q |
| |
|
||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
38608889 |
caagatcggcgatcgacaagtaataattcggtatgatatggaatcgcacattgctgatgtacgattgagaaccggagaatatagaaagatcatc |
38608796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 494
Target Start/End: Complemental strand, 38794072 - 38793579
Alignment:
| Q |
1 |
atctcaaccattggcttgacctgaggcatgggagacacacctgctgcagcagtgacatcagcagcacaatcaccacgtccatcaagagcagagcaggatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||| ||||||||||||||||||||||||||| || |
|
|
| T |
38794072 |
atctcaaccattggcttgacctgaggcatgggagacacacctgctgtagtagtgacaccagcagcacaaccaccacgtccatcaagagcagagcaggttt |
38793973 |
T |
|
| Q |
101 |
cttccgtcgcctgaccagcagaatctgatacagtagcagctctggctccgacacccgctccttccgatgctccttcacctcctaagatagtatcataagc |
200 |
Q |
| |
|
|||||||||||||||| | ||||||| ||| ||| | |||| |||||| ||||| ||||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
38793972 |
cttccgtcgcctgacctggagaatctaataaagttgatgctccggctccaacacctgctccttccgacgctccttcacctcctaatatagtatcataagc |
38793873 |
T |
|
| Q |
201 |
agccgcaataggattgatatgcggaaaaggcaaatacacgctgtgcacaacaatcttcacattgcggatgacgtcagcaaccttaactctcacatagtta |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38793872 |
agccgcaataggattgatatgcggaaaaggcaaatacacactgtgcacaactatcttcacattgcggatgacgtcagcaaccttaactctcacatagtta |
38793773 |
T |
|
| Q |
301 |
atcctcattggcgctgatgccactcctccaccggaagtagtgatcagaagcggctgacctcgctccaatgtaggcagagcagttccaactggaagctttt |
400 |
Q |
| |
|
|||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
38793772 |
atcctcatcggcgctgatgtcactcctccgccggaagtagtgatcagaagcggctgacctcgctccaatgtaggcagagcagttccaactggaagcttct |
38793673 |
T |
|
| Q |
401 |
caagatcagcgatagacaagtaatgattcggtatgatatggaatcgcacattgctgatgtacgattgagagccagagaatatagaaagatcatc |
494 |
Q |
| |
|
||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
38793672 |
caagatcggcgatcgacaagtaataattcggtatgatatggaatcgcacattgctgatgtacgattgagaaccggagaatatagaaagatcatc |
38793579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 34592887 - 34592844
Alignment:
| Q |
1 |
atctcaaccattggcttgacctgaggcatgggagacacacctgc |
44 |
Q |
| |
|
||||||||||||||| ||||| |||||| ||||||||||||||| |
|
|
| T |
34592887 |
atctcaaccattggcctgacccgaggcacgggagacacacctgc |
34592844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 494
Target Start/End: Original strand, 28730408 - 28730901
Alignment:
| Q |
1 |
atctcaaccattggcttgacctgaggcatgggagacacacctgctgcagcagtgacatcagcagcacaatcaccacgtccatcaagagcagagcaggatt |
100 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||| || |
|
|
| T |
28730408 |
atctcaaacattggcctgacctgaggcatgggagacacacctgttgcagcagtgacatcagcagcacagccaccacgcccatcaagagcagagcaggttt |
28730507 |
T |
|
| Q |
101 |
cttccgtcgcctgaccagcagaatctgatacagtagcagctctggctccgacacccgctccttccgatgctccttcacctcctaagatagtatcataagc |
200 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28730508 |
cttcagtcgcctgaccagcagaatctgatacagtagcagctctggctccgacacctgctccttccgatgctccttcacctcctaagatagtatcataagc |
28730607 |
T |
|
| Q |
201 |
agccgcaataggattgatatgcggaaaaggcaaatacacgctgtgcacaacaatcttcacattgcggatgacgtcagcaaccttaactctcacatagtta |
300 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||| |||||||||||||||||||| || || ||||||||| |
|
|
| T |
28730608 |
atccgcaataggattgatatgcggaaaaggcaaatacacactatgcacaactatcttcacattacggatgacgtcagcaaccttcaccctaacatagtta |
28730707 |
T |
|
| Q |
301 |
atcctcattggcgctgatgccactcctccaccggaagtagtgatcagaagcggctgacctcgctccaatgtaggcagagcagttccaactggaagctttt |
400 |
Q |
| |
|
|||||||| || ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
28730708 |
atcctcatcggtgctaatgtcactcctccaccggaagtagtgatcagaagcggctgacctcgctccaatgtaggcagagcagttccaactggaagcttct |
28730807 |
T |
|
| Q |
401 |
caagatcagcgatagacaagtaatgattcggtatgatatggaatcgcacattgctgatgtacgattgagagccagagaatatagaaagatcatc |
494 |
Q |
| |
|
||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||| |
|
|
| T |
28730808 |
caagatcggcgattgacaagtaacgattcggtatgatatggaatcgcacattgctgatatacgattgagaaccggagaatatagaaagatcatc |
28730901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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