View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9461_high_40 (Length: 242)
Name: NF9461_high_40
Description: NF9461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9461_high_40 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 12054446 - 12054669
Alignment:
| Q |
19 |
cgagaagtgtcaatgtttaacaccggcacgataagacactctcaattttctttaattattatcagtgtctacatgtcaatgttattttcgtgtgtattaa |
118 |
Q |
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| T |
12054446 |
cgagaagtgtcgatgataaacaccggcacgataacacactctcaattttatttaattattatcagtgtctacatgtcaatgttattttcgtgtgtattaa |
12054545 |
T |
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| Q |
119 |
tctcagtgcttcatagatgtttagtattagagatagaagagaaagatgcacaagagactacacaaatgacaagcttacttgagatacaagctacttagtt |
218 |
Q |
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| T |
12054546 |
tctcagtgcttcatagatgtttcgtattagagatagaagagaaagatgcacaagagactacacaaatgacaagcttacttgagatacaagctacttagtt |
12054645 |
T |
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| Q |
219 |
acatttagtctaatcttcaatatt |
242 |
Q |
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|||||||||||||||||||||||| |
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| T |
12054646 |
acatttagtctaatcttcaatatt |
12054669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 242
Target Start/End: Complemental strand, 20629513 - 20629290
Alignment:
| Q |
19 |
cgagaagtgtcaatgtttaacaccggcacgataagacactctcaattttctttaattattatcagtgtctacatgtcaatgttattttcgtgtgtattaa |
118 |
Q |
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||||||||||| ||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20629513 |
cgagaagtgtcgatgtttaactccggcacgataactcactctcaattttttttaattattatcagtgtctacatgtcaatgttattttcgtgtgtattaa |
20629414 |
T |
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| Q |
119 |
tctcagtgcttcatagatgtttagtattagagatagaagagaaagatgcacaagagactacacaaatgacaagcttacttgagatacaagctacttagtt |
218 |
Q |
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| T |
20629413 |
tctcagtgcttcatagatgtttcgtattagagatagaagagaaagatgcacaagagactacacaaatgacaagcttacttgagatacaagctacttagtt |
20629314 |
T |
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| Q |
219 |
acatttagtctaatcttcaatatt |
242 |
Q |
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| T |
20629313 |
acatttagtctaatcttcaatatt |
20629290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 96
Target Start/End: Complemental strand, 4382873 - 4382840
Alignment:
| Q |
63 |
attttctttaattattatcagtgtctacatgtca |
96 |
Q |
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| T |
4382873 |
attttctttaattattatcggtgtctacatgtca |
4382840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 135 - 229
Target Start/End: Complemental strand, 32705076 - 32704982
Alignment:
| Q |
135 |
atgtttagtattagagatagaagagaaagatgcacaagagactacacaaatgacaagcttacttgagatacaagctacttagttacatttagtct |
229 |
Q |
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| T |
32705076 |
atgtttactattagagatagaagagaaagatgttaaggattcaacacccatatctagcttacttgagatacaagctacttagttacatttagtct |
32704982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 60 - 94
Target Start/End: Complemental strand, 10692528 - 10692494
Alignment:
| Q |
60 |
tcaattttctttaattattatcagtgtctacatgt |
94 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
10692528 |
tcaattttctttaattattatcagtgtctacatgt |
10692494 |
T |
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