View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9461_high_48 (Length: 214)
Name: NF9461_high_48
Description: NF9461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9461_high_48 |
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Alignment Details
Target: chr6 (Bit Score: 66; Significance: 2e-29; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 131 - 196
Target Start/End: Original strand, 2256201 - 2256266
Alignment:
| Q |
131 |
ttacctccaaaatatcatgagtccttttcatgttaatcctacaaagatcctcacaaacaactctaa |
196 |
Q |
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| T |
2256201 |
ttacctccaaaatatcatgagtccttttcatgttaatcctacaaagatcctcacaaacaactctaa |
2256266 |
T |
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Target: chr6; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 2256090 - 2256143
Alignment:
| Q |
13 |
cacagactcaatttcaatgagtatcactaatctatttatccaattcaaccaact |
66 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2256090 |
cacagactcaatttcaatgagtatcactaatctatttatccaattcaaccaact |
2256143 |
T |
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