View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9461_low_1 (Length: 859)
Name: NF9461_low_1
Description: NF9461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9461_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 533; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 16 - 573
Target Start/End: Original strand, 43144625 - 43145178
Alignment:
| Q |
16 |
aggttgttagtgttgattcatgtgaacattttggcagaattctgatgctgaattgggttatttttcaacttagctgcaatgttagattagaaactttaat |
115 |
Q |
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| T |
43144625 |
aggttgttagtgttgattcatgtgaacattttggcagaattctgatgctgaattgggttatttttcaacttagctgcaatgttagattagaaactttaat |
43144724 |
T |
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| Q |
116 |
gttctattcatgattatgttctcaagttatcattagtgtggaattttatttgtgtaatatgaaatttgtaaacaagtagtttgtataattttaatcatgt |
215 |
Q |
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| T |
43144725 |
gttctattcatgattatgttctcaagttatcattagtgtggaattatatttgtgtaatatgaaatttgtaaacaagtagtttgtataattttaatcatgt |
43144824 |
T |
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| Q |
216 |
tatcatcttgagggatgttaaaataaaatagacaaaacaggtttgtctgtaatgatcacaagtgacatataaatccaaaaataaattatattccgcattg |
315 |
Q |
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| T |
43144825 |
tatcatcttgagggatgttaaaataaaatagacaaaacaggtttgtctgtaatgatcacaagtgacatataaatccaaaaataaattatattccgcattg |
43144924 |
T |
|
| Q |
316 |
ttagaagttgcatctccaccactgacatttatgcgtctaagatgaatagatatgatttgtgaaaataaacattttcatttatcagttctttcatcttgaa |
415 |
Q |
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| T |
43144925 |
ttacaagttgcatctccaccactgacatttatgcgtctaagatgaatagatatgatttgtgaaaataaacattttcatttatcagttctttcatcttgaa |
43145024 |
T |
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| Q |
416 |
gtgtgggtgggttatcacaagtgaccttcctagccatatgtacttttgtggtacttctttcaatgtggaacttgacaaggatagaagaagttcaactatg |
515 |
Q |
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| T |
43145025 |
gt----gtgggttatcacaagtgaccttcctagccatatgtacttttgtggtacttctttcaatgtggaacttgacaaggatagaagaagttcaactatg |
43145120 |
T |
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| Q |
516 |
caacatgttgtctccagaaggaccacaactttgtctcgctacctttaattggtgtctt |
573 |
Q |
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| T |
43145121 |
caacatgttgtctccagaaggaccacaactttgtctcgctacctttaattggtgtctt |
43145178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 424 - 599
Target Start/End: Original strand, 43157537 - 43157709
Alignment:
| Q |
424 |
gggttatcacaagtgaccttcctagccatatgtacttttgtggtacttctttcaatgtggaacttgacaaggatagaagaagttcaactatgcaacatgt |
523 |
Q |
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| T |
43157537 |
gggttatcactggtgaccttcctagccatatgcactcttgtggaacttctttcaatgtggaacttgacaaggatagaa---gttcaactgtgcaacatgc |
43157633 |
T |
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| Q |
524 |
tgtctccagaaggaccacaactttgtctcgctacctttaattggtgtcttgtaagtattattttcttgcttgtttt |
599 |
Q |
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| T |
43157634 |
tgtctccagaggcaccacaactttctctggctacctataattggtgtcttgtaagtactcttttcttgcttgtttt |
43157709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 611 - 700
Target Start/End: Original strand, 43145175 - 43145264
Alignment:
| Q |
611 |
tcttatatatatgtcatcttgtacatttcttcaatggcattgacatttgtatccttctgagtaaatctttctatatgcatggacttgtgt |
700 |
Q |
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| T |
43145175 |
tcttatatatatgtcatcttgtacatttcttcaatggcattgacatttgtatccttctgagtaaatctttctatatgcatggacttgtgt |
43145264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 43156986 - 43157072
Alignment:
| Q |
16 |
aggttgttagtgttgattcatgtgaacattttggcagaattctgatgctgaat-tgggttatttttcaacttagctgcaatgttaga |
101 |
Q |
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| T |
43156986 |
aggttgttagtgttgattcatgtgaacattttgggaggattctgatgctgaatatgcgttattgttcaatttagttgcagtgttaga |
43157072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 779 - 824
Target Start/End: Original strand, 43145343 - 43145388
Alignment:
| Q |
779 |
ttattcattccaccagggacttgaaatgtgcttgacttctggttga |
824 |
Q |
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| T |
43145343 |
ttattcattccaccagggacttgaaatgtgcttgacttctggttga |
43145388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 313 - 381
Target Start/End: Original strand, 43157373 - 43157441
Alignment:
| Q |
313 |
ttgttagaagttgcatctccaccactgacatttatgcgtctaagatgaatagatatgatttgtgaaaat |
381 |
Q |
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| T |
43157373 |
ttgttacaagttgcatctccactactgatatttatgcatctacgatgaatagatagggtttgtgaaaat |
43157441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 630 - 679
Target Start/End: Original strand, 43157752 - 43157801
Alignment:
| Q |
630 |
tgtacatttcttcaatggcattgacatttgtatccttctgagtaaatctt |
679 |
Q |
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| T |
43157752 |
tgtacatttattctatggtattgacaattgaatccttctgagtaaatctt |
43157801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 445 - 533
Target Start/End: Complemental strand, 33832559 - 33832474
Alignment:
| Q |
445 |
ctagccatatgtacttttgtggtacttctttcaatgtggaacttgacaaggatagaagaagttcaactatgcaacatgttgtctccaga |
533 |
Q |
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| T |
33832559 |
ctagccatatgcactcttcttgagcttctttcaatgtggaacttgacaagaat---agaagttcagctttgcaacatgttgtccccaga |
33832474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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