View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9461_low_10 (Length: 528)
Name: NF9461_low_10
Description: NF9461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9461_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 16 - 512
Target Start/End: Complemental strand, 931313 - 930817
Alignment:
| Q |
16 |
gacatcatttcccggacacaatcatcagcctcaccgttttccataggctcaagaacatttagttccgaaaatgcaggggcgtttatattctccaattggc |
115 |
Q |
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| T |
931313 |
gacatcatttcccgggcacaatcatcagcctcaccgttttccctaggctcaagaacatttagttccgaaaatgcaggggcgtttatattctccaattggc |
931214 |
T |
|
| Q |
116 |
tctttatctccaagtcaggggacattttcacaaatcatgcaaaccttcactgctcagaaatcatgcaaaaaccacaatatcatcatgaaaaacatgagtc |
215 |
Q |
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| T |
931213 |
tctttatctccaagtcaggggacattttcacaaatcatgcaaaccttcactgctcagaaatcatgcaaaaaccacaatatcatcatgaaaaacatgagtc |
931114 |
T |
|
| Q |
216 |
acaggttgacgaaagnnnnnnntagatgcataataaaccaagactacagaacaaattgcaaaacgtcaccttgatccaannnnnnnactattataaagga |
315 |
Q |
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|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
931113 |
acaggttgaccaaagaaaaaaatagatgcataataaaccaagactacagaacaaattgcaaaacgtcaccttgatccaatctttttactattataaagga |
931014 |
T |
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| Q |
316 |
aaatacataactaaaactactacattcttcataataatggtaaacacattcatatcttgaagggctgtctggtcactcatgagtcatgacctaccaattt |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
931013 |
aaatacataactaaaactactacattcttcataataatggtaaacacattcatatcttgaagggctgtctggtcactcatgagtcatgacctaacaattt |
930914 |
T |
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| Q |
416 |
atcgaacacgataaccattggcataacacaatttttgatacatcatgagatacgtaaaacatctcatttaaagttcttgaattaccgctcaattatg |
512 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
930913 |
atcgaacacgataaccactggcataacacaatttttgatacatcatgagatacgtaaaacatctcatttaaagttcttgaattaccgctcaattatg |
930817 |
T |
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