View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9461_low_100 (Length: 250)
Name: NF9461_low_100
Description: NF9461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9461_low_100 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 6 - 237
Target Start/End: Original strand, 34342382 - 34342614
Alignment:
| Q |
6 |
aagaagtgcctctataagcaacttgggaccatagaaatttgttttcatgacgttttcagcatggtccactgaattctcgtcgagctcattgaatgataca |
105 |
Q |
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| T |
34342382 |
aagaagtgcctctataagcaacttgggaccatagaaatttgttttcatgacgttttcagcatggtccactgaattctcgtcgagctcattgaatgataca |
34342481 |
T |
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| Q |
106 |
gccgcattgttcacctgctcacataaaaaattaattagatcatttcatttattttcctatagaagaagtttttacaaaaaacatatttatgtcaataaaa |
205 |
Q |
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||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34342482 |
gccgcattgttcacctgatcacatacaaaattaattagatcatttcatttattttcctatagaagaagtttttacaaaaaacatatttatgtcaataaaa |
34342581 |
T |
|
| Q |
206 |
aattacaacta-gtccatgtcttgtctaggtct |
237 |
Q |
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||||||||||| |||||||||| |||||||||| |
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| T |
34342582 |
aattacaactaggtccatgtctagtctaggtct |
34342614 |
T |
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