View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9461_low_104 (Length: 250)
Name: NF9461_low_104
Description: NF9461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9461_low_104 |
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| [»] scaffold1452 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 43948015 - 43947777
Alignment:
| Q |
1 |
ccataaactataaaatatcgagaaaaaattaataacaggacaaaacatgcaaactatcacctaaaccgcagaattcaacaaaagtgttgtttataaggaa |
100 |
Q |
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| T |
43948015 |
ccataaactataaaatatcgagaaaaaattaataacaggacaaaacatgcaaactatcacctaaaccgcagaattcaacaaaagtgttgtttataaggaa |
43947916 |
T |
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| Q |
101 |
gacaagaataacctgtttgagaaactcctcgtgccaggtatcaagtgaatcaaacgacctcatgacattcacatcatacgcaagaacacagcaatccgcc |
200 |
Q |
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| T |
43947915 |
gacaagaataacctgtttgagaaactcctcgtgccaggtatcaagtgaatcaaacgacctcatgacattcacatcatacgcaagaacacagcaatccgcc |
43947816 |
T |
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| Q |
201 |
cctctataaaacgcaactccaagactttggaatatctct |
239 |
Q |
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| T |
43947815 |
cctctataaaacgcaactccaagactttggaatctctct |
43947777 |
T |
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Target: scaffold1452 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold1452
Description:
Target: scaffold1452; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 110 - 238
Target Start/End: Original strand, 426 - 554
Alignment:
| Q |
110 |
aacctgtttgagaaactcctcgtgccaggtatcaagtgaatcaaacgacctcatgacattcacatcatacgcaagaacacagcaatccgcccctctataa |
209 |
Q |
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||||||||| |||||||||||||||||| ||||||||| ||||| ||| |||| ||||| |||||||| | |||||||||||||| |||||||||||| |
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| T |
426 |
aacctgtttcagaaactcctcgtgccagttatcaagtgtgtcaaatgacttcatcacattaacatcataaacgagaacacagcaatcggcccctctataa |
525 |
T |
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| Q |
210 |
aacgcaactccaagactttggaatatctc |
238 |
Q |
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| T |
526 |
aatgcaacaccaagactttgaaatctctc |
554 |
T |
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