View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9461_low_105 (Length: 249)

Name: NF9461_low_105
Description: NF9461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9461_low_105
NF9461_low_105
[»] chr6 (10 HSPs)
chr6 (1-245)||(20628978-20629222)
chr6 (1-125)||(12054737-12054861)
chr6 (144-244)||(12027440-12027540)
chr6 (144-244)||(12034360-12034460)
chr6 (144-244)||(20658417-20658517)
chr6 (137-229)||(20612065-20612157)
chr6 (173-244)||(20600936-20601007)
chr6 (66-133)||(12027107-12027174)
chr6 (66-133)||(12034027-12034094)
chr6 (66-133)||(20658782-20658849)
[»] chr3 (2 HSPs)
chr3 (9-47)||(17699117-17699155)
chr3 (9-46)||(16926416-16926453)


Alignment Details
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 20629222 - 20628978
Alignment:
Q  1 cagttataagaatgagatcattttccatttcttactttccataacatttagagatataatagtagtatacaatgcataacttactcatgtgctcattatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20629222 cagttataagaatgagatcattttccatttcttactttccataacatttagagatataatagtagtatacaatgcataacttactcatgtgctcattatg 20629123  T
Q  101 atttattggtttaaaaccccttcctgaaagtgtattcctattttgatgtaacagatggggttgtcctccaaacaaatttccatggacttatgatttcaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20629122 atttattggtttaaaaccccttcctgaaagtgtattcctattttgatgtaacagatggggttgtcctccaaacaaatttccatggacttatgatttcaaa 20629023  T
Q  201 gagacatgctatcttctagaaggaaaagtaaaagtaacaccaaac 245  Q
    | |||||||||||||||||||||||||||||| ||||||||||||    
T  20629022 gtgacatgctatcttctagaaggaaaagtaaaggtaacaccaaac 20628978  T

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Target: chr6; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 12054737 - 12054861
Alignment:
Q  1 cagttataagaatgagatcattttccatttcttactttccataacatttagagatataatagtagtatacaatgcataacttactcatgtgctcattatg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  12054737 cagttataagaatgagatcattttccatttcttactttccataacatttagagatataatagtagtatacaatgcataacttactcatgtgctcattata 12054836  T
Q  101 atttattggtttaaaaccccttcct 125  Q
    |||||||||||||||||||||||||    
T  12054837 atttattggtttaaaaccccttcct 12054861  T

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Target: chr6; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 144 - 244
Target Start/End: Original strand, 12027440 - 12027540
Alignment:
Q  144 tgatgtaacagatggggttgtcctccaaacaaatttccatggacttatgatttcaaagagacatgctatcttctagaaggaaaagtaaaagtaacaccaa 243  Q
    |||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||| ||||||||||||||| |||| || ||||||||||    
T  12027440 tgatgtaacagatggggttgtcctccaagcaaattcccatggacttatgattccaaagagacatgttatcttctagaaggagaagttaaggtaacaccaa 12027539  T
Q  244 a 244  Q
    |    
T  12027540 a 12027540  T

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Target: chr6; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 144 - 244
Target Start/End: Original strand, 12034360 - 12034460
Alignment:
Q  144 tgatgtaacagatggggttgtcctccaaacaaatttccatggacttatgatttcaaagagacatgctatcttctagaaggaaaagtaaaagtaacaccaa 243  Q
    |||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||| ||||||||||||||| |||| || ||||||||||    
T  12034360 tgatgtaacagatggggttgtcctccaagcaaattcccatggacttatgattccaaagagacatgttatcttctagaaggagaagttaaggtaacaccaa 12034459  T
Q  244 a 244  Q
    |    
T  12034460 a 12034460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 144 - 244
Target Start/End: Complemental strand, 20658517 - 20658417
Alignment:
Q  144 tgatgtaacagatggggttgtcctccaaacaaatttccatggacttatgatttcaaagagacatgctatcttctagaaggaaaagtaaaagtaacaccaa 243  Q
    |||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||| ||||||||||||||| |||| || ||||||||||    
T  20658517 tgatgtaacagatggggttgtcctccaagcaaattcccatggacttatgattccaaagagacatgttatcttctagaaggagaagttaaggtaacaccaa 20658418  T
Q  244 a 244  Q
    |    
T  20658417 a 20658417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 137 - 229
Target Start/End: Complemental strand, 20612157 - 20612065
Alignment:
Q  137 cctattttgatgtaacagatggggttgtcctccaaacaaatttccatggacttatgatttcaaagagacatgctatcttctagaaggaaaagt 229  Q
    ||||||||||||| | ||||||||||||||||||| |||||| ||||  |||||||||| |||||| |||| |||||||||||||||||||||    
T  20612157 cctattttgatgtgaaagatggggttgtcctccaagcaaattcccatcaacttatgattccaaagaaacattctatcttctagaaggaaaagt 20612065  T

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Target: chr6; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 173 - 244
Target Start/End: Complemental strand, 20601007 - 20600936
Alignment:
Q  173 caaatttccatggacttatgatttcaaagagacatgctatcttctagaaggaaaagtaaaagtaacaccaaa 244  Q
    |||||| |||||||||||||||| |||||||||||| |||||||||||||||||||| || |||||||||||    
T  20601007 caaattcccatggacttatgattccaaagagacatgttatcttctagaaggaaaagttaaggtaacaccaaa 20600936  T

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Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 133
Target Start/End: Original strand, 12027107 - 12027174
Alignment:
Q  66 tatacaatgcataacttactcatgtgctcattatgatttattggtttaaaaccccttcctgaaagtgt 133  Q
    ||||||||  ||||||||||||||||||||||||| |||||| ||| |||| | |||| |||||||||    
T  12027107 tatacaattaataacttactcatgtgctcattatggtttattagttcaaaatctcttcgtgaaagtgt 12027174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 133
Target Start/End: Original strand, 12034027 - 12034094
Alignment:
Q  66 tatacaatgcataacttactcatgtgctcattatgatttattggtttaaaaccccttcctgaaagtgt 133  Q
    ||||||||  ||||||||||||||||||||||||| |||||| ||| |||| | |||  |||||||||    
T  12034027 tatacaattaataacttactcatgtgctcattatggtttattagttcaaaatctcttggtgaaagtgt 12034094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 133
Target Start/End: Complemental strand, 20658849 - 20658782
Alignment:
Q  66 tatacaatgcataacttactcatgtgctcattatgatttattggtttaaaaccccttcctgaaagtgt 133  Q
    ||||||||  ||||||||||||||||||||||||| |||||| ||| |||| | |||  |||||||||    
T  20658849 tatacaattaataacttactcatgtgctcattatggtttattagttcaaaatctcttggtgaaagtgt 20658782  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 17699117 - 17699155
Alignment:
Q  9 agaatgagatcattttccatttcttactttccataacat 47  Q
    |||||||||||||||| |||||||| |||||||||||||    
T  17699117 agaatgagatcattttacatttcttgctttccataacat 17699155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 16926416 - 16926453
Alignment:
Q  9 agaatgagatcattttccatttcttactttccataaca 46  Q
    |||||||||||||||| |||||||| ||||||||||||    
T  16926416 agaatgagatcattttacatttcttgctttccataaca 16926453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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