View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9461_low_106 (Length: 249)

Name: NF9461_low_106
Description: NF9461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9461_low_106
NF9461_low_106
[»] chr7 (14 HSPs)
chr7 (1-236)||(36226114-36226349)
chr7 (3-232)||(35982243-35982466)
chr7 (3-232)||(36003655-36003878)
chr7 (1-236)||(36221218-36221453)
chr7 (8-143)||(35973540-35973675)
chr7 (8-143)||(35994952-35995087)
chr7 (1-236)||(36217233-36217468)
chr7 (3-63)||(35939562-35939622)
chr7 (1-236)||(35947013-35947242)
chr7 (1-236)||(35977673-35977902)
chr7 (1-236)||(35999085-35999314)
chr7 (1-76)||(35958218-35958293)
chr7 (197-236)||(35958408-35958447)
chr7 (2-36)||(35955268-35955302)
[»] chr1 (1 HSPs)
chr1 (3-232)||(18125928-18126157)


Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 36226114 - 36226349
Alignment:
Q  1 ctatgggaataacacacaaacttttatcaccatcagcatcaccttgaggatgtggctgcatcaaaagcttgataatatcattcctctcattctcccttcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36226114 ctatgggaataacacacaaacttttatcaccatcagcatcaccttgaggatgtggctgcatcaaaagcttgataatatcattcctctcattctcccttcc 36226213  T
Q  101 tatcacatctgaagcatcaacgtgggaatgagtcatttctctcttctgcacagcaagtcctaaatcaacactaattgctgcaagtccaaacctagtccca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36226214 tatcacatctgaagcatcaacgtgggaatgagtcatttctctcttctgcacagcaagtcctaaatcaacactaattgctgcaagtccaaacctagtccca 36226313  T
Q  201 tcagctgccaccttattcaatctatccctaatctct 236  Q
    ||||||||||||||||||||||||||||||||||||    
T  36226314 tcagctgccaccttattcaatctatccctaatctct 36226349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 3 - 232
Target Start/End: Original strand, 35982243 - 35982466
Alignment:
Q  3 atgggaataacacacaaacttttatcaccatcagcatcaccttgaggatgtggctgcatcaaaagcttgataatatcattcctctcattctcccttccta 102  Q
    |||||||||||||| || ||||||||||||||      |||||||||||||||  ||||||||||||||||||| |||| ||| || ||||| |||||||    
T  35982243 atgggaataacacataagcttttatcaccatc------accttgaggatgtggtagcatcaaaagcttgataatttcatccctatccttctctcttccta 35982336  T
Q  103 tcacatctgaagcatcaacgtgggaatgagtcatttctctcttctgcacagcaagtcctaaatcaacactaattgctgcaagtccaaacctagtcccatc 202  Q
    |||||||  |||||||||| ||||||||||||| |||||| || ||||||  | ||||   |||||||  ||||     |||||||||| ||||||||||    
T  35982337 tcacatccaaagcatcaacatgggaatgagtcaattctcttttttgcacaatatgtccaggatcaacatcaattctcataagtccaaacttagtcccatc 35982436  T
Q  203 agctgccaccttattcaatctatccctaat 232  Q
    ||||||||||||||  ||||||| ||||||    
T  35982437 agctgccaccttatctaatctattcctaat 35982466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 3 - 232
Target Start/End: Original strand, 36003655 - 36003878
Alignment:
Q  3 atgggaataacacacaaacttttatcaccatcagcatcaccttgaggatgtggctgcatcaaaagcttgataatatcattcctctcattctcccttccta 102  Q
    |||||||||||||| || ||||||||||||||      |||||||||||||||  ||||||||||||||||||| |||| ||| || ||||| |||||||    
T  36003655 atgggaataacacataagcttttatcaccatc------accttgaggatgtggtagcatcaaaagcttgataatttcatccctatccttctctcttccta 36003748  T
Q  103 tcacatctgaagcatcaacgtgggaatgagtcatttctctcttctgcacagcaagtcctaaatcaacactaattgctgcaagtccaaacctagtcccatc 202  Q
    |||||||  |||||||||| ||||||||||||| |||||| || ||||||  | ||||   |||||||  ||||     |||||||||| ||||||||||    
T  36003749 tcacatccaaagcatcaacatgggaatgagtcaattctcttttttgcacaatatgtccaggatcaacatcaattctcataagtccaaacttagtcccatc 36003848  T
Q  203 agctgccaccttattcaatctatccctaat 232  Q
    ||||||||||||||  ||||||| ||||||    
T  36003849 agctgccaccttatctaatctattcctaat 36003878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 36221453 - 36221218
Alignment:
Q  1 ctatgggaataacacacaaacttttatcaccatcagcatcaccttgaggatgtggctgcatcaaaagcttgataatatcattcctctcattctcccttcc 100  Q
    |||||||||||||||||||| |||| ||||||||  |||| || |||||||| || ||||||||||| |||||||| || | ||| ||||||||||| ||    
T  36221453 ctatgggaataacacacaaatttttgtcaccatctccatctccatgaggatgcggttgcatcaaaagtttgataatttcttccctgtcattctccctccc 36221354  T
Q  101 tatcacatctgaagcatcaacgtgggaatgagtcatttctctcttctgcacagcaagtcctaaatcaacactaattgctgcaagtccaaacctagtccca 200  Q
     || |||  ||||||||||||||  |||||||| | ||||||| |||||||| || |  |     |||||   |||    ||||||||||||| |||||     
T  36221353 aataacacttgaagcatcaacgtatgaatgagtgaattctctcctctgcacaacaggatcaggtgcaacatcgattctcacaagtccaaaccttgtcccg 36221254  T
Q  201 tcagctgccaccttattcaatctatccctaatctct 236  Q
    |||||||||||||||||||||||||| |||||||||    
T  36221253 tcagctgccaccttattcaatctatctctaatctct 36221218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 8 - 143
Target Start/End: Original strand, 35973540 - 35973675
Alignment:
Q  8 aataacacacaaacttttatcaccatcagcatcaccttgaggatgtggctgcatcaaaagcttgataatatcattcctctcattctcccttcctatcaca 107  Q
    |||||||||||||||||||||||| ||  |||||||||||||| |||| ||||||| |||||||||||| || | ||| ||||||||||| || || |||    
T  35973540 aataacacacaaacttttatcaccgtctccatcaccttgaggacgtggttgcatcagaagcttgataatttcttccctatcattctccctcccaataaca 35973639  T
Q  108 tctgaagcatcaacgtgggaatgagtcatttctctc 143  Q
      ||||||||| || ||||||| ||||| |||||||    
T  35973640 cttgaagcatcgacatgggaattagtcaattctctc 35973675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 8 - 143
Target Start/End: Original strand, 35994952 - 35995087
Alignment:
Q  8 aataacacacaaacttttatcaccatcagcatcaccttgaggatgtggctgcatcaaaagcttgataatatcattcctctcattctcccttcctatcaca 107  Q
    |||||||||||||||||||||||| ||  |||||||||||||| |||| ||||||| |||||||||||| || | ||| ||||||||||| || || |||    
T  35994952 aataacacacaaacttttatcaccgtctccatcaccttgaggacgtggttgcatcagaagcttgataatttcttccctatcattctccctcccaataaca 35995051  T
Q  108 tctgaagcatcaacgtgggaatgagtcatttctctc 143  Q
      ||||||||| || ||||||| ||||| |||||||    
T  35995052 cttgaagcatcgacatgggaattagtcaattctctc 35995087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 36217468 - 36217233
Alignment:
Q  1 ctatgggaataacacacaaacttttatcaccatcagcatcaccttgaggatgtggctgcatcaaaagcttgataatatcattcctctcattctcccttcc 100  Q
    |||||||||||||||| |||||| ||| |||||   ||| |||||||||||  |  | ||||||||||| ||||||  | | | | ||||||||||||||    
T  36217468 ctatgggaataacacataaacttctatgaccatttccataaccttgaggatcggaatccatcaaaagctcgataattgcttccttgtcattctcccttcc 36217369  T
Q  101 tatcacatctgaagcatcaacgtgggaatgagtcatttctctcttctgcacagcaagtcctaaatcaacactaattgctgcaagtccaaacctagtccca 200  Q
    ||| |||  |||| ||||||  |||||||  || |||||||| || ||||||| ||||||    ||||||  ||||    ||||||||||| | ||||||    
T  36217368 tataacacttgaaacatcaatatgggaataggtgatttctctattgtgcacagaaagtccgggctcaacatgaattctcacaagtccaaacttggtccca 36217269  T
Q  201 tcagctgccaccttattcaatctatccctaatctct 236  Q
    ||||||||||| |||| ||||||||| |||||||||    
T  36217268 tcagctgccactttatccaatctatctctaatctct 36217233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 35939562 - 35939622
Alignment:
Q  3 atgggaataacacacaaacttttatcaccatcagcatcaccttgaggatgtggctgcatca 63  Q
    |||||||||||||| |||||||||||||||||| ||||||| ||||||||||| |||||||    
T  35939562 atgggaataacacataaacttttatcaccatcaccatcaccgtgaggatgtggttgcatca 35939622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 35947013 - 35947242
Alignment:
Q  1 ctatgggaataacacacaaacttttatcaccatcagcatcaccttgaggatgtggctgcatcaaaagcttgataatatcattcctctcattctcccttcc 100  Q
    |||| ||||| ||||| | ||| |||||||||||| |||| || ||||||||||||||||||||||| ||||  || ||||    |||||| || |||||    
T  35947013 ctattggaatgacacagagactattatcaccatcaccatcgccgtgaggatgtggctgcatcaaaagattgaagatttcatcttgctcattttctcttcc 35947112  T
Q  101 tatcacatctgaagcatcaacgtgggaatgagtcatttctctcttctgcacagcaagtcctaaatcaacactaattgctgcaagtccaaacctagtccca 200  Q
    |||||||  |||||||||||  || | ||  ||||||||||| |  |||||| | |||||   ||||||| |      || ||| ||||||||   ||||    
T  35947113 tatcacacttgaagcatcaatatgaggatatgtcatttctctttgttgcacaacgagtccgggatcaacatt------tgtaagaccaaacctgacccca 35947206  T
Q  201 tcagctgccaccttattcaatctatccctaatctct 236  Q
    |||||||||||||||| || ||||||||||||||||    
T  35947207 tcagctgccaccttatccattctatccctaatctct 35947242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 35977673 - 35977902
Alignment:
Q  1 ctatgggaataacacacaaacttttatcaccatcagcatcaccttgaggatgtggctgcatcaaaagcttgataatatcattcctctcattctcccttcc 100  Q
    |||| ||||| ||||| | ||| ||||||||| || |||| |  ||||| |||| |||||||||||| |||||||| ||||    |||||| || |||||    
T  35977673 ctattggaatgacacaaagactattatcaccaccaccatcgctgtgagggtgtgactgcatcaaaagattgataatttcatcttgctcattttctcttcc 35977772  T
Q  101 tatcacatctgaagcatcaacgtgggaatgagtcatttctctcttctgcacagcaagtcctaaatcaacactaattgctgcaagtccaaacctagtccca 200  Q
    |||||||  |||||||||||  || | ||  ||||||||||| |  |||||| | |||||   ||||||| |      || ||| ||||||||   ||||    
T  35977773 tatcacacttgaagcatcaatatgaggatatgtcatttctctttgttgcacaacgagtccgggatcaacatt------tgtaagaccaaacctgacccca 35977866  T
Q  201 tcagctgccaccttattcaatctatccctaatctct 236  Q
    |||||||||||||||| || ||||||||||||||||    
T  35977867 tcagctgccaccttatccattctatccctaatctct 35977902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 35999085 - 35999314
Alignment:
Q  1 ctatgggaataacacacaaacttttatcaccatcagcatcaccttgaggatgtggctgcatcaaaagcttgataatatcattcctctcattctcccttcc 100  Q
    |||| ||||| ||||| | ||| ||||||||| || |||| |  ||||| |||| |||||||||||| |||||||| ||||    |||||| || |||||    
T  35999085 ctattggaatgacacaaagactattatcaccaccaccatcgctgtgagggtgtgactgcatcaaaagattgataatttcatcttgctcattttctcttcc 35999184  T
Q  101 tatcacatctgaagcatcaacgtgggaatgagtcatttctctcttctgcacagcaagtcctaaatcaacactaattgctgcaagtccaaacctagtccca 200  Q
    |||||||  |||||||||||  || | ||  ||||||||||| |  |||||| | |||||   ||||||| |      || ||| ||||||||   ||||    
T  35999185 tatcacacttgaagcatcaatatgaggatatgtcatttctctttgttgcacaacgagtccgggatcaacatt------tgtaagaccaaacctgacccca 35999278  T
Q  201 tcagctgccaccttattcaatctatccctaatctct 236  Q
    |||||||||||||||| || ||||||||||||||||    
T  35999279 tcagctgccaccttatccattctatccctaatctct 35999314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 35958218 - 35958293
Alignment:
Q  1 ctatgggaataacacacaaacttttatcaccatcagcatcaccttgaggatgtggctgcatcaaaagcttgataat 76  Q
    |||| ||||| ||||| | ||| |||||||||||| |||| ||  |||||||||||||||||||||| ||||||||    
T  35958218 ctattggaatgacacagagactattatcaccatcaccatctccgcgaggatgtggctgcatcaaaagattgataat 35958293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 35958408 - 35958447
Alignment:
Q  197 cccatcagctgccaccttattcaatctatccctaatctct 236  Q
    |||||| ||||||||||||| |||||||||||||||||||    
T  35958408 cccatccgctgccaccttatccaatctatccctaatctct 35958447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 36
Target Start/End: Original strand, 35955268 - 35955302
Alignment:
Q  2 tatgggaataacacacaaacttttatcaccatcag 36  Q
    ||||||||||||||||||||||||||| |||||||    
T  35955268 tatgggaataacacacaaacttttatctccatcag 35955302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 3 - 232
Target Start/End: Original strand, 18125928 - 18126157
Alignment:
Q  3 atgggaataacacacaaacttttatcaccatcagcatcaccttgaggatgtggctgcatcaaaagcttgataatatcattcctctcattctcccttccta 102  Q
    |||||||||||| | | |||||||||||||||| ||||||| ||||||||||  |||||||||||||||||||| || | ||| ||| |||| |||||||    
T  18125928 atgggaataacagatagacttttatcaccatcaccatcaccatgaggatgtgcttgcatcaaaagcttgataatctcttccctatcactctctcttccta 18126027  T
Q  103 tcacatctgaagcatcaacgtgggaatgagtcatttctctcttctgcacagcaagtcctaaatcaacactaattgctgcaagtccaaacctagtcccatc 202  Q
    | |||    |||||||||| |  | || ||||||||| ||||| ||||||   ||||    ||||||| |||| | ||||||||||||| ||||||||||    
T  18126028 ttacactcaaagcatcaacatcaggataagtcatttccctcttttgcacaatgagtctgggatcaacattaatagttgcaagtccaaacttagtcccatc 18126127  T
Q  203 agctgccaccttattcaatctatccctaat 232  Q
     | ||| ||||||| |||||||||||||||    
T  18126128 ggttgctaccttatccaatctatccctaat 18126157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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