View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9461_low_110 (Length: 246)
Name: NF9461_low_110
Description: NF9461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9461_low_110 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 45969464 - 45969697
Alignment:
| Q |
1 |
taataattatgtaacagagaagtcatttccataatctatgttgatcattgacttcataagatgannnnnnnnnctatggttggttccttgataggattgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
45969464 |
taataattatgtaacagagaagtcatttccataatctatgttgatcattgacttcataagatgatttttttttctatggttggttccttgataggattgt |
45969563 |
T |
|
| Q |
101 |
ggtggatcattctgcttagagcttatgggaaactcactggtgactacagcttgcaagaaaagttggaagtgcaaacaggcttacgaatgatccttaacct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45969564 |
ggtggatcattctgcttagagcttatgggaaactcactggtgactacagcttgcaagaaaagttggaagtgcaaacaggcttacgaatgatccttaacct |
45969663 |
T |
|
| Q |
201 |
atgtttatcagatggatttgatatgtttccgtct |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
45969664 |
atgtttatcagatggatttgatatgtttccgtct |
45969697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 88 - 240
Target Start/End: Complemental strand, 37653958 - 37653806
Alignment:
| Q |
88 |
ttgataggattgtggtggatcattctgcttagagcttatgggaaactcactggtgactacagcttgcaagaaaagttggaagtgcaaacaggcttacgaa |
187 |
Q |
| |
|
||||||||||||||||||||||| || | | ||||||||||| |||| ||||||||||| |||||||||| | | || || ||||||||||| || |
|
|
| T |
37653958 |
ttgataggattgtggtggatcatcctattacgggcttatgggaagatcaccggtgactacagtttgcaagaaagggttgatgttcaaacaggcttgaaaa |
37653859 |
T |
|
| Q |
188 |
tgatccttaacctatgtttatcagatggatttgatatgtttccgtctctgcta |
240 |
Q |
| |
|
|||| ||||| | ||| || ||||||| |||||||||||||| ||||||||| |
|
|
| T |
37653858 |
tgattcttaaattgtgtctaacagatggttttgatatgtttccatctctgcta |
37653806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University