View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9461_low_125 (Length: 239)
Name: NF9461_low_125
Description: NF9461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9461_low_125 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 28 - 239
Target Start/End: Complemental strand, 52948368 - 52948157
Alignment:
| Q |
28 |
tccatagaactctgccccaaatgtgaacctaccatacctatagctaaatgttcaacatataaatgagccacacgtttgttctcaacaacatagtcaccaa |
127 |
Q |
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| T |
52948368 |
tccatagaactctaccccacatgtgaacctaccatccctataactgaatgttcaacatataaatgagccacacgtttgttctcaataacataatcaccaa |
52948269 |
T |
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| Q |
128 |
caacatcagtgtcattatcatcaacaatccttttgtatttatcatcttcaataacataccacaataaacgatacttaaggtgatcatcataacctaactc |
227 |
Q |
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| T |
52948268 |
caatatcagtgtcattatcatcaacaatccttttgtatttatcatcttcaataacataccaccataaatgatacttaaggtgatcatcataacctaactc |
52948169 |
T |
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| Q |
228 |
ttttagtatacc |
239 |
Q |
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|||||||||||| |
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| T |
52948168 |
ttttagtatacc |
52948157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 230
Target Start/End: Complemental strand, 31810865 - 31810767
Alignment:
| Q |
132 |
atcagtgtcattatcatcaacaatccttttgtatttatcatcttcaataacataccacaataaacgatacttaaggtgatcatcataacctaactcttt |
230 |
Q |
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| T |
31810865 |
atcagtgtcattgtcatctataatccttacatacttgtcatcctcaataatataccaccataacctatacttaaggtgatcagaatatcctaaatcttt |
31810767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 230
Target Start/End: Complemental strand, 7797623 - 7797525
Alignment:
| Q |
132 |
atcagtgtcattatcatcaacaatccttttgtatttatcatcttcaataacataccacaataaacgatacttaaggtgatcatcataacctaactcttt |
230 |
Q |
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| T |
7797623 |
atcagtgtcattgtcatctataatccttaaatacttgtcatcctcaataatataccaccataacctatacttaaggtgatcaaaatatcctaaatcttt |
7797525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 230
Target Start/End: Original strand, 30320348 - 30320446
Alignment:
| Q |
132 |
atcagtgtcattatcatcaacaatccttttgtatttatcatcttcaataacataccacaataaacgatacttaaggtgatcatcataacctaactcttt |
230 |
Q |
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| T |
30320348 |
atcagtgtcattgtcatctataatccttacatacttgtcatcctcaataatataccaccataacctatacttaaggtgatcagaatatcctaaatcttt |
30320446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 230
Target Start/End: Complemental strand, 22055210 - 22055112
Alignment:
| Q |
132 |
atcagtgtcattatcatcaacaatccttttgtatttatcatcttcaataacataccacaataaacgatacttaaggtgatcatcataacctaactcttt |
230 |
Q |
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|||||||||||| ||||| | ||||||| || || ||||| ||||||| ||||||| |||| | |||||||||||||||| ||| ||||| ||||| |
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| T |
22055210 |
atcagtgtcattgtcatctataatccttacatacttgtcatcctcaataatataccaccataacctatacttaaggtgatcagaatatcctaaatcttt |
22055112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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