View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9461_low_126 (Length: 238)
Name: NF9461_low_126
Description: NF9461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9461_low_126 |
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Alignment Details
Target: chr7 (Bit Score: 112; Significance: 9e-57; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 104 - 219
Target Start/End: Complemental strand, 9352319 - 9352204
Alignment:
| Q |
104 |
ttcaatgttgacctggtgagttactctataatctgtcattgtaacaatgaaaacggaagagaatagaagttgaagaaacacttacataaataagcaactc |
203 |
Q |
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| T |
9352319 |
ttcaatgttgacctggtgagttactctataatctgtcattgtaacaatgaaaatggaagagaatagaagttgaagaaacacttacataaataagcaactc |
9352220 |
T |
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| Q |
204 |
taggatgagtcttttc |
219 |
Q |
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| T |
9352219 |
taggatgagtcttttc |
9352204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 9352367 - 9352319
Alignment:
| Q |
20 |
atcaccaaacaaaacatagcataacatgacctatgagtaattcatcaat |
68 |
Q |
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| T |
9352367 |
atcaccaaacaaaacatagcataacatgacctatgagtaattcatcaat |
9352319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 650245 - 650207
Alignment:
| Q |
181 |
acacttacataaataagcaactctaggatgagtcttttc |
219 |
Q |
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| T |
650245 |
acacttacataaataagcaactttaggatgagtcttttc |
650207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 219
Target Start/End: Original strand, 426665 - 426702
Alignment:
| Q |
182 |
cacttacataaataagcaactctaggatgagtcttttc |
219 |
Q |
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| T |
426665 |
cacttacataaataagcaactctaggatgagttttttc |
426702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 219
Target Start/End: Complemental strand, 52596158 - 52596117
Alignment:
| Q |
178 |
gaaacacttacataaataagcaactctaggatgagtcttttc |
219 |
Q |
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|||| ||||||| | ||||||||||||||||||||||||||| |
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| T |
52596158 |
gaaatacttacagagataagcaactctaggatgagtcttttc |
52596117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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