View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9461_low_127 (Length: 236)

Name: NF9461_low_127
Description: NF9461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9461_low_127
NF9461_low_127
[»] chr5 (6 HSPs)
chr5 (139-235)||(28473714-28473810)
chr5 (3-82)||(28473959-28474038)
chr5 (139-235)||(32761236-32761332)
chr5 (139-235)||(32662885-32662981)
chr5 (139-218)||(32720631-32720710)
chr5 (139-218)||(32738394-32738473)
[»] chr1 (2 HSPs)
chr1 (139-227)||(17587925-17588013)
chr1 (139-225)||(17581454-17581540)
[»] chr7 (2 HSPs)
chr7 (139-234)||(7971675-7971770)
chr7 (139-211)||(37575288-37575360)


Alignment Details
Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 139 - 235
Target Start/End: Complemental strand, 28473810 - 28473714
Alignment:
Q  139 catacctgaaagacaggaatagttaagggttgaaaacatttacagcaatcaaacaaattagggttggaaatcattagaggctccattacaacttttc 235  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28473810 catacctgaaagacaggaatagttaagggttgaaaacatttgcagcaatcaaacaaattagggttggaaatcattagaggctccattacaacttttc 28473714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 3 - 82
Target Start/End: Complemental strand, 28474038 - 28473959
Alignment:
Q  3 actcatattaggcgagtcccagtgatagacatgtgtcgtgtcccacacaacaccacacacataattacactaaattatac 82  Q
    |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  28474038 actcatattaggcgagtcccagtgatggacatgtgtcgtgccccacacaacaccacacacataattacactaaattatac 28473959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 139 - 235
Target Start/End: Complemental strand, 32761332 - 32761236
Alignment:
Q  139 catacctgaaagacaggaatagttaagggttgaaaacatttacagcaatcaaacaaattagggttggaaatcattagaggctccattacaacttttc 235  Q
    |||||||||||||| |||||||| ||| |||||| ||||||  ||||||||| ||| ||||||||  ||||||| ||||||||||||||| ||||||    
T  32761332 catacctgaaagacgggaatagtcaagcgttgaagacatttggagcaatcaagcaatttagggtttaaaatcatcagaggctccattacaccttttc 32761236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 235
Target Start/End: Original strand, 32662885 - 32662981
Alignment:
Q  139 catacctgaaagacaggaatagttaagggttgaaaacatttacagcaatcaaacaaattagggttggaaatcattagaggctccattacaacttttc 235  Q
    |||||||||||||| |||||||||||||| ||| |||| || |||||||||| ||| || |||||||||  ||| ||| | ||||||||| ||||||    
T  32662885 catacctgaaagacgggaatagttaagggctgagaacaattgcagcaatcaagcaattttgggttggaatacatcagatgatccattacaccttttc 32662981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 218
Target Start/End: Complemental strand, 32720710 - 32720631
Alignment:
Q  139 catacctgaaagacaggaatagttaagggttgaaaacatttacagcaatcaaacaaattagggttggaaatcattagagg 218  Q
    ||||||||||| || |||||  ||||||||||| |||| || |||||||||| ||| |||||||||||||| || |||||    
T  32720710 catacctgaaaaacgggaatctttaagggttgataacaattgcagcaatcaagcaatttagggttggaaattataagagg 32720631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 218
Target Start/End: Complemental strand, 32738473 - 32738394
Alignment:
Q  139 catacctgaaagacaggaatagttaagggttgaaaacatttacagcaatcaaacaaattagggttggaaatcattagagg 218  Q
    ||||||||||| || |||||  ||||||||||| |||| || ||||| |||| ||| |||||||||||||| || |||||    
T  32738473 catacctgaaaaacgggaatctttaagggttgataacaattgcagcactcaagcaatttagggttggaaattataagagg 32738394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 139 - 227
Target Start/End: Complemental strand, 17588013 - 17587925
Alignment:
Q  139 catacctgaaagacaggaatagttaagggttgaaaacatttacagcaatcaaacaaattagggttggaaatcattagaggctccattac 227  Q
    |||||||||||||  |||||||||||||||| ||||||||| |||||||||| ||||||||| | ||||||||| |||| |||||||||    
T  17588013 catacctgaaagatgggaatagttaagggttcaaaacatttgcagcaatcaagcaaattaggttcggaaatcatcagagactccattac 17587925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 139 - 225
Target Start/End: Complemental strand, 17581540 - 17581454
Alignment:
Q  139 catacctgaaagacaggaatagttaagggttgaaaacatttacagcaatcaaacaaattagggttggaaatcattagaggctccatt 225  Q
    |||||||||||||  |||||||||||||||| ||||||||| |||||||||| ||||| ||||| ||||||||| |  |||||||||    
T  17581540 catacctgaaagatgggaatagttaagggttcaaaacatttgcagcaatcaagcaaataagggtcggaaatcatcaacggctccatt 17581454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 139 - 234
Target Start/End: Original strand, 7971675 - 7971770
Alignment:
Q  139 catacctgaaagacaggaatagttaagggttgaaaacatttacagcaatcaaacaaattagggttggaaatcattagaggctccattacaactttt 234  Q
    ||||||||||||||||||||| |||  ||||||||||| || |||||||||| ||| |||| ||| |||||| | |||||||||||| || |||||    
T  7971675 catacctgaaagacaggaatacttagaggttgaaaacaattgcagcaatcaagcaatttagagtttgaaatcgtcagaggctccattgcacctttt 7971770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 37575360 - 37575288
Alignment:
Q  139 catacctgaaagacaggaatagttaagggttgaaaacatttacagcaatcaaacaaattagggttggaaatca 211  Q
    |||||||||||||| ||||| |||||||||||||||||  |  ||||||||| ||  ||||||||||||||||    
T  37575360 catacctgaaagacgggaatggttaagggttgaaaacaaatgtagcaatcaagcactttagggttggaaatca 37575288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University