View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9461_low_128 (Length: 236)
Name: NF9461_low_128
Description: NF9461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9461_low_128 |
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Alignment Details
Target: chr4 (Bit Score: 102; Significance: 9e-51; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 120 - 225
Target Start/End: Original strand, 2922212 - 2922317
Alignment:
| Q |
120 |
tctctttctcccacccctttaccattttcttctcaatcctcgcctgccatacgatttcctccgccattttcgccgttgccgtttgttgatctcttccccc |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
2922212 |
tctctttctcccacccctttaccattttcttctcaatcctcgcctgccatacgatttcctccgccattttcgccgttgccgtttgttgatctcctccccc |
2922311 |
T |
|
| Q |
220 |
tttgct |
225 |
Q |
| |
|
|||||| |
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|
| T |
2922312 |
tttgct |
2922317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 120 - 225
Target Start/End: Complemental strand, 2923222 - 2923117
Alignment:
| Q |
120 |
tctctttctcccacccctttaccattttcttctcaatcctcgcctgccatacgatttcctccgccattttcgccgttgccgtttgttgatctcttccccc |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
2923222 |
tctctttctcccacccctttaccattttcttctcaatcctcgcctgccatacgatttcctccgccattttcgccgttgccgtttgttgatctcctccccc |
2923123 |
T |
|
| Q |
220 |
tttgct |
225 |
Q |
| |
|
|||||| |
|
|
| T |
2923122 |
tttgct |
2923117 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 120 - 225
Target Start/End: Original strand, 34345409 - 34345514
Alignment:
| Q |
120 |
tctctttctcccacccctttaccattttcttctcaatcctcgcctgccatacgatttcctccgccattttcgccgttgccgtttgttgatctcttccccc |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
34345409 |
tctctttctcccacccctttaccattttcttctcaatcctcgcctgccatacgatttcctccgccattttcgccgttgccgtttgttgatctcctccccc |
34345508 |
T |
|
| Q |
220 |
tttgct |
225 |
Q |
| |
|
|||||| |
|
|
| T |
34345509 |
tttgct |
34345514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 120 - 225
Target Start/End: Original strand, 18481418 - 18481523
Alignment:
| Q |
120 |
tctctttctcccacccctttaccattttcttctcaatcctcgcctgccatacgatttcctccgccattttcgccgttgccgtttgttgatctcttccccc |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
18481418 |
tctctttctcccacccctttaccattttcttctcaatcctcgcctgccatacgatttcctccgccattttcgccgttgccgtttgttgatctccttcccc |
18481517 |
T |
|
| Q |
220 |
tttgct |
225 |
Q |
| |
|
|||||| |
|
|
| T |
18481518 |
tttgct |
18481523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 98; Significance: 2e-48; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 120 - 225
Target Start/End: Original strand, 6812330 - 6812435
Alignment:
| Q |
120 |
tctctttctcccacccctttaccattttcttctcaatcctcgcctgccatacgatttcctccgccattttcgccgttgccgtttgttgatctcttccccc |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
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|
| T |
6812330 |
tctctttctcccacccctttaccattttcttctcaatcctcgcctgccatacgatttcctccgtcattttcgccgttgccgtttgttgatctcctccccc |
6812429 |
T |
|
| Q |
220 |
tttgct |
225 |
Q |
| |
|
|||||| |
|
|
| T |
6812430 |
tttgct |
6812435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 120 - 225
Target Start/End: Original strand, 25323819 - 25323924
Alignment:
| Q |
120 |
tctctttctcccacccctttaccattttcttctcaatcctcgcctgccatacgatttcctccgccattttcgccgttgccgtttgttgatctcttccccc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
25323819 |
tctctttctcccacccctttaccattttcttctcaatccttgcctgccatacgatttcctccgccattttcgccgttgccgtttgttgatctcctccccc |
25323918 |
T |
|
| Q |
220 |
tttgct |
225 |
Q |
| |
|
|||||| |
|
|
| T |
25323919 |
tttgct |
25323924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 16 - 129
Target Start/End: Complemental strand, 4886778 - 4886664
Alignment:
| Q |
16 |
gaattgaaagatcacaattcacaaacacactctcaaaagaagatctcctctcctcatttcatctcacttcccatccccc-cttctatctaattccatata |
114 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||| |
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|
| T |
4886778 |
gaattgaaagatcacaattcacaaacactctctcaaaagaagatctcctcttctcatttcatctcacttcccatccccctcttctctctaattccatata |
4886679 |
T |
|
| Q |
115 |
tatattctctttctc |
129 |
Q |
| |
|
|||||||||| |||| |
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|
| T |
4886678 |
tatattctctctctc |
4886664 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 120 - 179
Target Start/End: Complemental strand, 25331750 - 25331691
Alignment:
| Q |
120 |
tctctttctcccacccctttaccattttcttctcaatcctcgcctgccatacgatttcct |
179 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
25331750 |
tctctttctcccacccctttaccattttcttctcaatcctcgcctgccatacgattncct |
25331691 |
T |
|
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