View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9461_low_133 (Length: 229)
Name: NF9461_low_133
Description: NF9461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9461_low_133 |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 10481447 - 10481234
Alignment:
| Q |
1 |
aaaggggtaagaattaatattttatggtcattagtattgtaaattggatgactcataagccactcacataaattaattgaagggacctatatgttggagc |
100 |
Q |
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| T |
10481447 |
aaaggggtaagaattaatattttatggtcattagtattgtaaattggatgactcataagccactcacataaattaattgaagggacctatatgttggagc |
10481348 |
T |
|
| Q |
101 |
aaatgctttttattttaagcaagtaacatcttgtacctaaattcaagtcattttatcacataagtaaaaccattgtgttaattaacgtacaattctctga |
200 |
Q |
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| T |
10481347 |
aaatgctttttatcttaagcaagtaacatcttgtacctaaattcaagtcattttatcacataagt-aaaccattgtgttaattaacgtacaattctctga |
10481249 |
T |
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| Q |
201 |
ttcatatgttcttga |
215 |
Q |
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||||||||||||||| |
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| T |
10481248 |
ttcatatgttcttga |
10481234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 4953544 - 4953708
Alignment:
| Q |
1 |
aaaggggtaagaattaatattttatggtcattagtattgtaaattggatgactcataagccactcacataaattaattgaagggacctatatgttggagc |
100 |
Q |
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|||||| |||||||| ||||| ||||||||||||||||||||||| |||||||||||||||| | |||||||||| |||||| |||||| |||||||| |
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| T |
4953544 |
aaagggttaagaatttatattgtatggtcattagtattgtaaattagatgactcataagccattaacataaattatttgaagaaacctat--gttggagc |
4953641 |
T |
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| Q |
101 |
aaatgctttttattttaagcaagtaacatcttgtacctaaattcaagtcattttatcacataagtaa |
167 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
4953642 |
aaatgctttttaatttaagcaagtaacatcttgtacctaaattctagtcattctatcacataagtaa |
4953708 |
T |
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