View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9461_low_142 (Length: 217)
Name: NF9461_low_142
Description: NF9461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9461_low_142 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-100; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 16003805 - 16003614
Alignment:
| Q |
18 |
ttttctatagctcttaccaccataaacatggttctgttcttgcaagatccatcacaaaatagaggtagttttagattttatattgatttccttccaattc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
16003805 |
ttttctatagctcttaccaccataaacatggttctgttcttgcaagatccatcacaaaatagaggtagttttagattttatattgatttcctttcaattc |
16003706 |
T |
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| Q |
118 |
tcaaaattaaagacctttgttgttgatcaaatattcaccctggttccattttcctccacaagtcgagtcataccgctatttctgtgctcctc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
16003705 |
tcaaaattaaagacctttgttgttgatcaaatattcaccctggttccattttcctccacaagtcgagtcataccgctatttctgtgttcctc |
16003614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 26795185 - 26794994
Alignment:
| Q |
18 |
ttttctatagctcttaccaccataaacatggttctgttcttgcaagatccatcacaaaatagaggtagttttagattttatattgatttccttccaattc |
117 |
Q |
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||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
26795185 |
ttttctacagctgttaccaccataaacatggttctgttcttgcaagatccatcacaaaatagaggtagttttagattctatattgatttccttccaattc |
26795086 |
T |
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| Q |
118 |
tcaaaattaaagacctttgttgttgatcaaatattcaccctggttccattttcctccacaagtcgagtcataccgctatttctgtgctcctc |
209 |
Q |
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| T |
26795085 |
tcaaaattaaagacctttgttgttgatcaaatattcaccctagttccgttttcctccacaagtcgagtcataccgctatttatgtgttcctc |
26794994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 40722149 - 40721968
Alignment:
| Q |
18 |
ttttctatagctcttaccaccataaacatggttctgttcttgcaagatccatcacaaaatagaggtagttttagattttatattgatttccttccaattc |
117 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40722149 |
ttttctatagctcttaccaccataaacatggttatgttcttgcaagatccatcacaaaatagaggtagttttagattttatattgatttccttccaattc |
40722050 |
T |
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| Q |
118 |
tcaaaattaaagacctttgttgttgatcaaatattcaccctggttccattttcctccacaagtcgagtcataccgctatttc |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | |||||| | ||||||||||||||||||||||||| |
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| T |
40722049 |
tcaaaattaaagacctttgttgttgatcaaatattcaccctggtttcgttttccacgacaagtcgagtcataccgctatttc |
40721968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 115; Significance: 1e-58; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 26 - 148
Target Start/End: Original strand, 27221941 - 27222063
Alignment:
| Q |
26 |
agctcttaccaccataaacatggttctgttcttgcaagatccatcacaaaatagaggtagttttagattttatattgatttccttccaattctcaaaatt |
125 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
27221941 |
agctcttaccaccataaatatggttctgttcttgcaagatccatcacaaaatagaggtagttttagattctatattgatttccttccaattctcaaaatt |
27222040 |
T |
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| Q |
126 |
aaagacctttgttgttgatcaaa |
148 |
Q |
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||||||||||||||||||||||| |
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| T |
27222041 |
aaagacctttgttgttgatcaaa |
27222063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 149 - 202
Target Start/End: Original strand, 27222822 - 27222875
Alignment:
| Q |
149 |
tattcaccctggttccattttcctccacaagtcgagtcataccgctatttctgt |
202 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
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| T |
27222822 |
tattcaccctggttccgttttcctccacaagtcgagtcatactgctatttctgt |
27222875 |
T |
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