View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9461_low_146 (Length: 209)

Name: NF9461_low_146
Description: NF9461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9461_low_146
NF9461_low_146
[»] chr5 (5 HSPs)
chr5 (7-102)||(28491002-28491097)
chr5 (148-190)||(12374697-12374739)
chr5 (147-190)||(33406335-33406378)
chr5 (148-190)||(15695721-15695763)
chr5 (145-185)||(15697005-15697043)
[»] chr2 (2 HSPs)
chr2 (147-187)||(8288707-8288747)
chr2 (148-190)||(4631472-4631514)
[»] chr4 (7 HSPs)
chr4 (148-190)||(31905615-31905657)
chr4 (148-190)||(55536856-55536898)
chr4 (148-190)||(36518862-36518904)
chr4 (148-190)||(43631176-43631218)
chr4 (148-190)||(25597356-25597398)
chr4 (148-190)||(42605892-42605934)
chr4 (148-185)||(2319005-2319042)
[»] chr6 (1 HSPs)
chr6 (148-186)||(13001180-13001218)
[»] chr1 (1 HSPs)
chr1 (148-190)||(49914428-49914470)
[»] chr3 (2 HSPs)
chr3 (148-190)||(42596912-42596954)
chr3 (152-185)||(23155454-23155487)
[»] chr7 (1 HSPs)
chr7 (152-185)||(27266487-27266520)


Alignment Details
Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 7 - 102
Target Start/End: Complemental strand, 28491097 - 28491002
Alignment:
Q  7 gtcgtaagaaagactttgaagcttctttaagaaagactcaagaaaatgaacattgaaagaattaagaaagtaactaaatttggctagccaaatgcg 102  Q
    ||||||| ||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28491097 gtcgtaaaaaagactttgaagctcctttgagaaagactcgagaaaatgaacattgaaagaattaagaaagtaactaaatttggctagccaaatgcg 28491002  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 148 - 190
Target Start/End: Original strand, 12374697 - 12374739
Alignment:
Q  148 catgtctgaccccctatgaaaattattcaccaaaatgatccac 190  Q
    |||||||||||||||||||||||||||||||||||||| ||||    
T  12374697 catgtctgaccccctatgaaaattattcaccaaaatgacccac 12374739  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 190
Target Start/End: Complemental strand, 33406378 - 33406335
Alignment:
Q  147 tcatgtctgaccccctatgaaaattattcaccaaaatgatccac 190  Q
    |||||||||| |||||||||||||||||||||||||||| ||||    
T  33406378 tcatgtctgatcccctatgaaaattattcaccaaaatgacccac 33406335  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 190
Target Start/End: Original strand, 15695721 - 15695763
Alignment:
Q  148 catgtctgaccccctatgaaaattattcaccaaaatgatccac 190  Q
    ||||||||||||  |||||||||||||||||||||||| ||||    
T  15695721 catgtctgaccctttatgaaaattattcaccaaaatgacccac 15695763  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 15697043 - 15697005
Alignment:
Q  145 tatcatgtctgaccccctatgaaaattattcaccaaaatga 185  Q
    |||||||||||||||  ||||||||||||||||||||||||    
T  15697043 tatcatgtctgaccc--tatgaaaattattcaccaaaatga 15697005  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 147 - 187
Target Start/End: Original strand, 8288707 - 8288747
Alignment:
Q  147 tcatgtctgaccccctatgaaaattattcaccaaaatgatc 187  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  8288707 tcatgtctgaccccctatgaaaattattcaccaaaatgatc 8288747  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 148 - 190
Target Start/End: Original strand, 4631472 - 4631514
Alignment:
Q  148 catgtctgaccccctatgaaaattattcaccaaaatgatccac 190  Q
    |||||||||||||||||||||||||||||||||||||| ||||    
T  4631472 catgtctgaccccctatgaaaattattcaccaaaatgacccac 4631514  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 148 - 190
Target Start/End: Original strand, 31905615 - 31905657
Alignment:
Q  148 catgtctgaccccctatgaaaattattcaccaaaatgatccac 190  Q
    |||||||||||||||||||||||||||||||||||||| ||||    
T  31905615 catgtctgaccccctatgaaaattattcaccaaaatgacccac 31905657  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 148 - 190
Target Start/End: Original strand, 55536856 - 55536898
Alignment:
Q  148 catgtctgaccccctatgaaaattattcaccaaaatgatccac 190  Q
    ||||||| |||||||||||||||||||||||||||||||||||    
T  55536856 catgtctcaccccctatgaaaattattcaccaaaatgatccac 55536898  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 148 - 190
Target Start/End: Complemental strand, 36518904 - 36518862
Alignment:
Q  148 catgtctgaccccctatgaaaattattcaccaaaatgatccac 190  Q
    ||||||||||||||||||||||||||||| |||||||| ||||    
T  36518904 catgtctgaccccctatgaaaattattcatcaaaatgacccac 36518862  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 148 - 190
Target Start/End: Original strand, 43631176 - 43631218
Alignment:
Q  148 catgtctgaccccctatgaaaattattcaccaaaatgatccac 190  Q
    |||||||||||||||||||| ||||||||||||||||| ||||    
T  43631176 catgtctgaccccctatgaatattattcaccaaaatgacccac 43631218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 190
Target Start/End: Complemental strand, 25597398 - 25597356
Alignment:
Q  148 catgtctgaccccctatgaaaattattcaccaaaatgatccac 190  Q
    ||||| |||||||||||||| ||||||||||||||||| ||||    
T  25597398 catgtttgaccccctatgaatattattcaccaaaatgacccac 25597356  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 190
Target Start/End: Original strand, 42605892 - 42605934
Alignment:
Q  148 catgtctgaccccctatgaaaattattcaccaaaatgatccac 190  Q
    ||||| ||||||||||| |||||||||||||||||||| ||||    
T  42605892 catgtgtgaccccctatcaaaattattcaccaaaatgacccac 42605934  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 148 - 185
Target Start/End: Complemental strand, 2319042 - 2319005
Alignment:
Q  148 catgtctgaccccctatgaaaattattcaccaaaatga 185  Q
    ||||||| |||||||||||| |||||||||||||||||    
T  2319042 catgtctcaccccctatgaatattattcaccaaaatga 2319005  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 148 - 186
Target Start/End: Complemental strand, 13001218 - 13001180
Alignment:
Q  148 catgtctgaccccctatgaaaattattcaccaaaatgat 186  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  13001218 catgtctgaccccctatgaaaattattcactaaaatgat 13001180  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 148 - 190
Target Start/End: Complemental strand, 49914470 - 49914428
Alignment:
Q  148 catgtctgaccccctatgaaaattattcaccaaaatgatccac 190  Q
    |||||||||||||||||||| ||||||||||||||||| ||||    
T  49914470 catgtctgaccccctatgaatattattcaccaaaatgacccac 49914428  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 190
Target Start/End: Complemental strand, 42596954 - 42596912
Alignment:
Q  148 catgtctgaccccctatgaaaattattcaccaaaatgatccac 190  Q
    ||||| |||||||||||||| ||||||||||||||| ||||||    
T  42596954 catgtttgaccccctatgaatattattcaccaaaataatccac 42596912  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 152 - 185
Target Start/End: Original strand, 23155454 - 23155487
Alignment:
Q  152 tctgaccccctatgaaaattattcaccaaaatga 185  Q
    ||||||||||||| ||||||||||||||||||||    
T  23155454 tctgaccccctattaaaattattcaccaaaatga 23155487  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 152 - 185
Target Start/End: Complemental strand, 27266520 - 27266487
Alignment:
Q  152 tctgaccccctatgaaaattattcaccaaaatga 185  Q
    |||||||||||||||| |||||||||||||||||    
T  27266520 tctgaccccctatgaatattattcaccaaaatga 27266487  T

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