View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9461_low_154 (Length: 201)

Name: NF9461_low_154
Description: NF9461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9461_low_154
NF9461_low_154
[»] chr4 (6 HSPs)
chr4 (1-104)||(9256534-9256637)
chr4 (1-104)||(9168852-9168955)
chr4 (11-104)||(9231356-9231449)
chr4 (11-104)||(9267186-9267279)
chr4 (17-104)||(9155415-9155502)
chr4 (11-97)||(9309931-9310017)
[»] scaffold0135 (1 HSPs)
scaffold0135 (11-104)||(37222-37315)


Alignment Details
Target: chr4 (Bit Score: 76; Significance: 2e-35; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 9256637 - 9256534
Alignment:
Q  1 agagaagaaaacctataatatcataagtagatgtaagcaacagaacaccaatattaggcctaacacaatatttctcagaaatcgtagtcttaacctgcaa 100  Q
    ||||||||||||||||||||||| |||||||  || |||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  9256637 agagaagaaaacctataatatcacaagtagacataggcaacagaactccaatattaggcctaacacaatatttctcaggaattgtagtcttaacctgcaa 9256538  T
Q  101 gttg 104  Q
    ||||    
T  9256537 gttg 9256534  T

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Target: chr4; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 9168852 - 9168955
Alignment:
Q  1 agagaagaaaacctataatatcataagtagatgtaagcaacagaacaccaatattaggcctaacacaatatttctcagaaatcgtagtcttaacctgcaa 100  Q
    ||||||||||||||||||||||| |||||||  || |||||| ||| ||||||||||||||||||||||||||||||| ||| ||||| |||||||||||    
T  9168852 agagaagaaaacctataatatcacaagtagacataggcaacataactccaatattaggcctaacacaatatttctcaggaattgtagttttaacctgcaa 9168951  T
Q  101 gttg 104  Q
    ||||    
T  9168952 gttg 9168955  T

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Target: chr4; HSP #3
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 11 - 104
Target Start/End: Complemental strand, 9231449 - 9231356
Alignment:
Q  11 acctataatatcataagtagatgtaagcaacagaacaccaatattaggcctaacacaatatttctcagaaatcgtagtcttaacctgcaagttg 104  Q
    |||| |||||||| || |||| ||| |||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  9231449 acctgtaatatcagaaatagacgtaggcaacagaactccaatattaggcctaacacaatatttctcaggaattgtagtcttaacctgcaagttg 9231356  T

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Target: chr4; HSP #4
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 11 - 104
Target Start/End: Complemental strand, 9267279 - 9267186
Alignment:
Q  11 acctataatatcataagtagatgtaagcaacagaacaccaatattaggcctaacacaatatttctcagaaatcgtagtcttaacctgcaagttg 104  Q
    ||||||||||||| || |||| ||| |||||||||| ||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||    
T  9267279 acctataatatcagaaatagacgtaggcaacagaactccaatattaggcctaacacaatatttctcaggaactgtagtcttaacctgcaagttg 9267186  T

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Target: chr4; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 104
Target Start/End: Complemental strand, 9155502 - 9155415
Alignment:
Q  17 aatatcataagtagatgtaagcaacagaacaccaatattaggcctaacacaatatttctcagaaatcgtagtcttaacctgcaagttg 104  Q
    ||||||| |||||||  || ||||||  || ||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  9155502 aatatcacaagtagacctaggcaacactactccattattaggcctaacacaatatttctcaggaattgtagtcttaacctgcaagttg 9155415  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 97
Target Start/End: Original strand, 9309931 - 9310017
Alignment:
Q  11 acctataatatcataagtagatgtaagcaacagaacaccaatattaggcctaacacaatatttctcagaaatcgtagtcttaacctg 97  Q
    |||| |||||||| |||||||  || |||||| ||| ||| ||||||||||||||||||| ||||  | | | ||||||||||||||    
T  9309931 acctgtaatatcacaagtagacctaggcaacacaactccattattaggcctaacacaatacttctttggatttgtagtcttaacctg 9310017  T

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Target: scaffold0135 (Bit Score: 62; Significance: 5e-27; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 11 - 104
Target Start/End: Complemental strand, 37315 - 37222
Alignment:
Q  11 acctataatatcataagtagatgtaagcaacagaacaccaatattaggcctaacacaatatttctcagaaatcgtagtcttaacctgcaagttg 104  Q
    |||| |||||||| || |||| ||| |||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  37315 acctgtaatatcagaaatagacgtaggcaacagaactccaatattaggcctaacacaatatttctcaggaattgtagtcttaacctgcaagttg 37222  T

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