View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9461_low_16 (Length: 497)
Name: NF9461_low_16
Description: NF9461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9461_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 17 - 484
Target Start/End: Original strand, 11367286 - 11367753
Alignment:
| Q |
17 |
aagttgggtagtgcgaagctacatggggagggagtgggtaagaggtcaggcctccatagcatggccttatcggttcaccaactttccggttatggtgaca |
116 |
Q |
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| T |
11367286 |
aagttgggtagtgcgaagctacatggggagggagtgggtaagaggtcaggcctccatagcatggccttatcggttcaccaactttccggttatggtgaca |
11367385 |
T |
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| Q |
117 |
cactcgaggagtaataaagtgattcgtaaaggaataacgttggtttggaatgcgaccttatgggtgttatggaatgtgagaaatggtaaaatctttgaga |
216 |
Q |
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| T |
11367386 |
cactcgaggagtaataaagtgattcgtaaaggaataacgttggtttggaatgcgaccttatgggtgttatggaatgtgagaaatggtaaaatctttgaga |
11367485 |
T |
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| Q |
217 |
ctaaagattgtgcacaggaagaagtgatcgagaaaataaaagtggtgtcttggaagtggttccttagtagaatggcgaagagctcttgtttataatatga |
316 |
Q |
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| T |
11367486 |
ctaaagattgtgcacaggaagaagtgatcgagaaaataaaagtggtgtcttggaagtggttccttagtagaatggcgaagagctcttgtttataatatga |
11367585 |
T |
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| Q |
317 |
atggtggtggaacccaattatgtgctttgccttacgatgtgtttgcaggcggtctgttttggtggtctagaattggaatgcgtggtttggtggtggcata |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
11367586 |
atggtggtggaacccaattatgtgctttgccttacgatgtgtttgcaggcggtctgttttggtggtctagaatcggaatgcgcggtttggtggtggcata |
11367685 |
T |
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| Q |
417 |
cctggtctgttttggacctctggtttggtattaggtttctcacctgggagtctttatacgtctccttc |
484 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
11367686 |
cctggtctgttttggacctctggtttggtattagttttctcacctgggagtctttatacgtctccttc |
11367753 |
T |
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