View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9461_low_18 (Length: 461)
Name: NF9461_low_18
Description: NF9461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9461_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 18 - 428
Target Start/End: Complemental strand, 32653112 - 32652704
Alignment:
| Q |
18 |
gctagtttgtaaggccttagagatgagatttgcctataaaagtgtagcgttagacattatcnnnnnnngaggaagaaagtgcagtgtttaattgttgtat |
117 |
Q |
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| T |
32653112 |
gctagtttgtaaggccttagagatgagatttgcctataaaagtgcggcgttagacgttat-tttttttgagtaagaaagtgcagtgtttaattgttgtat |
32653014 |
T |
|
| Q |
118 |
tatatgttttaatagccttttaatgtggataggatgttcttggcattcgatctaaatctaaaaggcattaaaacattcaatacagaaattttacctgtaa |
217 |
Q |
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| T |
32653013 |
tatatgttttaatagccttttaatgttgataggatgttcttggcattcgatctaaatctaaaaggcattaaaatattcaatacagaaattttacctgtaa |
32652914 |
T |
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| Q |
218 |
aattgagtgtaaacatttattaaactcatgtttgaaggctcaactatgttttatttgtaaatattagttatttattaggatgttaatttggatcttagtg |
317 |
Q |
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| T |
32652913 |
aattgagtgtaaacatttattaaactcatgtttgaaggctcaactatgttttatttgtaaatattagttatttattaggatgttaatttggatcttagtg |
32652814 |
T |
|
| Q |
318 |
gttgttagggtgttaatattgaagattataaatgaatgcatttttaatcaatttgaatttcttgcactttgaatatgttattatcttttctcctcttttc |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
32652813 |
gttgttagggtgttaatattgaagattataaatgaatgc-tttttaatcactttgaatttcttgcactttgaatatgatattatcttttctcctcttttc |
32652715 |
T |
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| Q |
418 |
actttgaatct |
428 |
Q |
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| T |
32652714 |
actttgaatct |
32652704 |
T |
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