View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9461_low_2 (Length: 716)

Name: NF9461_low_2
Description: NF9461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9461_low_2
NF9461_low_2
[»] chr7 (1 HSPs)
chr7 (1-702)||(44851206-44851897)


Alignment Details
Target: chr7 (Bit Score: 641; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 641; E-Value: 0
Query Start/End: Original strand, 1 - 702
Target Start/End: Original strand, 44851206 - 44851897
Alignment:
Q  1 gcttcattgctcatcatcacctatacttcaacacataaccatccagatcccactgccctctcctccaccacaaatttagctcaacaaccaaaagaatcca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44851206 gcttcattgctcatcatcacctatacttcaacacataaccatccagatcccactgccctctcctccaccacaaatttagctcaacaaccaaaagaatcca 44851305  T
Q  101 aaaccgaaacaaccaaagatctcccagttacttctaaggaagaaaaccaagaacagaaacaggtagaagaggagattaacagtaataagagcactgtgag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  44851306 aaaccgaaacaaccaaagatctcccagttacttctaaggaagaaaaccaagaacaaaaacaggtagaagaggagattaacagtaataagagcactgtgag 44851405  T
Q  201 tagtagtgatcaagttacaaatgaagaaaattttcattacttacaatctacaacacactgctcagaggacatcattatagaccaagaagatcctttcaaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44851406 tagtagtgatcaagttacaaatgaagaaaattttcattacttacaatctacaacacactgctcagaggacatcattatagaccaagaagatcctttcaaa 44851505  T
Q  301 ctaaatatagaaaaaagccatattgacaaaatagatcttctcttagaggaagagccactctgctatgcacagttaaagaatatgtcagcatctaaatcag 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44851506 ctaaatatagaaaaaagccatattgacaaaatagatcttctcttagaggaagagccactctgctatgcacagttaaagaatatgtcagcatctaaatcag 44851605  T
Q  401 aagaatttgattttttcgatgagcttgaggagttacctatgtcttcatctattttacactttacgaggagcattttttctgatgaaaggattcctgttgc 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44851606 aagaatttgattttttcgatgagcttgaggagttacctatgtcttcatctattttacactttacgaggagcattttttctgatgaaaggattcctgttgc 44851705  T
Q  501 cccttcttgattgattcaagtgnnnnnnnnnnatgtgtctgttgtctagaagaatgtaacaaaatgtattgttcatatatcgcatgctacaaacatccca 600  Q
    ||||||||||||||||                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44851706 cccttcttgattgatt----------ttttttatgtgtctgttgtctagaagaatgtaacaaaatgtattgttcatatatcgcatgctacaaacatccca 44851795  T
Q  601 catatcaatttcaggtagtttttaaatttggcatctttctatttcccacctttatttatatccatcccttactgacacgcaatactacgtccctaccctt 700  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  44851796 catatcaatttcaggtagtttttaaatttggcatctttctatttcccacctttatttatatccatcccatactgacacgcaatactacgtccctaccctt 44851895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University