View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9461_low_22 (Length: 431)
Name: NF9461_low_22
Description: NF9461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9461_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 1e-97; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 203 - 412
Target Start/End: Complemental strand, 51385685 - 51385476
Alignment:
| Q |
203 |
catatataggtgtggagaagaatggttaaattcatctggccaaattggatttgagatatgtcacagctcatggtaatgtgttctttgatccttaannnnn |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51385685 |
catatataggtgtggagaagaatggttaaattcatctggccaaattggatttgagatatgtcacagctcatggtaatgtgttctttgatccttaattttt |
51385586 |
T |
|
| Q |
303 |
nnattgaagtacctatacatgttgtgattatttttaaagaatgctattgtaaacatttatttgcattagtttattctttgtctgtttatcatcttcaaca |
402 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
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| T |
51385585 |
ttattgaagtacctatacatgttgtgattatttttaaagaatgctattgtaaacattaatttgcattagtttattgtttgtctgtttatcatcttcaaca |
51385486 |
T |
|
| Q |
403 |
ggtttcaaat |
412 |
Q |
| |
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|||||||||| |
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| T |
51385485 |
ggtttcaaat |
51385476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 10 - 135
Target Start/End: Complemental strand, 51385878 - 51385753
Alignment:
| Q |
10 |
aagcaaaggcactagacagtaggttgaatgtttctgattgtaaggaggcttttggtatctttgtatgttacttgcagaaatcaaggtaattgttgttcat |
109 |
Q |
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||||| ||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51385878 |
aagcagaggcactgggcagtaggttgaatgtttctgattgtgaggaggcttttggtatctttgtatgttacttgcagaaatcaaggtaattgttgttcat |
51385779 |
T |
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| Q |
110 |
atatagatttattgtgggtttggttc |
135 |
Q |
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|||||||||||||||||||||||||| |
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| T |
51385778 |
atatagatttattgtgggtttggttc |
51385753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 223 - 296
Target Start/End: Complemental strand, 27841330 - 27841257
Alignment:
| Q |
223 |
aatggttaaattcatctggccaaattggatttgagatatgtcacagctcatggtaatgtgttctttgatcctta |
296 |
Q |
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| T |
27841330 |
aatggttaaattcatctgaccaaattggatttatgtcatgtcacagctcatagtagtgtgttctttgatcctta |
27841257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 312 - 398
Target Start/End: Original strand, 14185531 - 14185617
Alignment:
| Q |
312 |
tacctatacatgttgtgattatttttaaagaatgctattgtaaacatttatttgcattagtttattctttgtctgtttatcatcttc |
398 |
Q |
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| T |
14185531 |
tacctatacatgttgtgattagttttaaagaatgatatagtagacattaagttataatagtttaatctttgtttgtttatcatcttc |
14185617 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 215 - 276
Target Start/End: Complemental strand, 31770002 - 31769941
Alignment:
| Q |
215 |
tggagaagaatggttaaattcatctggccaaattggatttgagatatgtcacagctcatggt |
276 |
Q |
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|||||| || || ||||||||||||| ||||||||||||| ||||||||||| |||||||| |
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| T |
31770002 |
tggagatgattgattaaattcatctgatcaaattggatttgtgatatgtcacaactcatggt |
31769941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 273
Target Start/End: Complemental strand, 7607442 - 7607384
Alignment:
| Q |
215 |
tggagaagaatggttaaattcatctggccaaattggatttgagatatgtcacagctcat |
273 |
Q |
| |
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|||||| || || |||||||||||||| ||||||| ||||| ||||||||||| ||||| |
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| T |
7607442 |
tggagatgattgattaaattcatctggtcaaattgaatttgtgatatgtcacaactcat |
7607384 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 273
Target Start/End: Original strand, 14185453 - 14185511
Alignment:
| Q |
215 |
tggagaagaatggttaaattcatctggccaaattggatttgagatatgtcacagctcat |
273 |
Q |
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|||||| || || ||||||||||||| ||||||||||||| ||||||||||| ||||| |
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| T |
14185453 |
tggagatgattgattaaattcatctgatcaaattggatttgtgatatgtcacaactcat |
14185511 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 30 - 135
Target Start/End: Complemental strand, 11637060 - 11636957
Alignment:
| Q |
30 |
aggttgaatgtttctgattgtaaggaggcttttggtatctttgtatgttacttgcagaaatcaaggtaattgttgttcatatatagatttattgtgggtt |
129 |
Q |
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||||||||||||| |||||| | | |||||||||||||||||||||||| ||| | ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
11637060 |
aggttgaatgtttgtgattgga--gtggcttttggtatctttgtatgttatttgtacaaatcaaggtaattgttgttcgcgtatagatttattgtgggtt |
11636963 |
T |
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| Q |
130 |
tggttc |
135 |
Q |
| |
|
|||||| |
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|
| T |
11636962 |
tggttc |
11636957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 223 - 296
Target Start/End: Original strand, 16360448 - 16360521
Alignment:
| Q |
223 |
aatggttaaattcatctggccaaattggatttgagatatgtcacagctcatggtaatgtgttctttgatcctta |
296 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| || |||||||| ||||| ||| |||||||||||||||||| |
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| T |
16360448 |
aatggttaaattcatctgaccaaattggatttatgacatgtcacaactcatagtagtgtgttctttgatcctta |
16360521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 228 - 273
Target Start/End: Original strand, 41811024 - 41811069
Alignment:
| Q |
228 |
ttaaattcatctggccaaattggatttgagatatgtcacagctcat |
273 |
Q |
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|||||||||||||| ||||||||||||| ||||||||||| ||||| |
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| T |
41811024 |
ttaaattcatctggtcaaattggatttgtgatatgtcacaactcat |
41811069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 411
Target Start/End: Original strand, 32445311 - 32445407
Alignment:
| Q |
312 |
tacctatacatgttgtgattatttttaaagaatgctattgtaaacatttatttgcattagtttattctttgtctgtttatcatcttcaacaggtttcaaa |
411 |
Q |
| |
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||||||||||||||||||||| ||||||||||| |||||||| ||| | |||||| |||| || ||||| ||||| ||||||| |||||||||||| |
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| T |
32445311 |
tacctatacatgttgtgattagctttaaagaatgtaattgtaaa-attaagttgcataagttaat--tttgtgtgtttgtcatcttatacaggtttcaaa |
32445407 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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