View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9461_low_23 (Length: 418)

Name: NF9461_low_23
Description: NF9461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9461_low_23
NF9461_low_23
[»] chr3 (15 HSPs)
chr3 (118-403)||(10499648-10499915)
chr3 (179-258)||(9998787-9998865)
chr3 (179-258)||(10108553-10108631)
chr3 (179-258)||(10229792-10229870)
chr3 (219-273)||(10218873-10218927)
chr3 (219-273)||(10255782-10255836)
chr3 (219-267)||(10227875-10227923)
chr3 (12-51)||(10516228-10516267)
chr3 (184-257)||(10218539-10218611)
chr3 (219-273)||(10018288-10018340)
chr3 (179-258)||(10233387-10233465)
chr3 (20-51)||(21408930-21408961)
chr3 (219-273)||(10218155-10218209)
chr3 (209-262)||(10439638-10439691)
chr3 (14-51)||(10657502-10657539)
[»] chr5 (8 HSPs)
chr5 (179-258)||(26825746-26825824)
chr5 (219-273)||(26798344-26798398)
chr5 (219-267)||(26801252-26801300)
chr5 (219-267)||(26808802-26808850)
chr5 (219-267)||(26816192-26816240)
chr5 (219-267)||(26823829-26823877)
chr5 (184-258)||(26798010-26798083)
chr5 (219-273)||(26797626-26797680)
[»] chr2 (1 HSPs)
chr2 (219-273)||(26891605-26891659)
[»] chr8 (1 HSPs)
chr8 (210-250)||(11484131-11484171)
[»] chr6 (1 HSPs)
chr6 (11-51)||(19294443-19294483)


Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 118 - 403
Target Start/End: Original strand, 10499648 - 10499915
Alignment:
Q  118 ccatataacgtcgaaggttctaaccatttttatccataattgattatctaatctatagttgaaacttcaaagatgccaattgcatttttacgtgtgaaac 217  Q
    |||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  10499648 ccatatcacgtcgaaggttctaaccattttcatccataattgactatctaatctatagttgaaacttcaaagatggcaattgcatttttacgtgtgaaac 10499747  T
Q  218 ttttctttgtatatttattatttagtcagatgtggatccataaaccattaatgagctctgcttgccaacaaacaagtattattaatttatcattcacatg 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||             |||||||||||    
T  10499748 ttttctttgtatatttattatttagtcagatgtggatccataaaccattaatgagctctgcttgccaacaaagaag-------------tcattcacatg 10499834  T
Q  318 ttattcatcaaaaactgttttgttatcctattcattcacattccagtcatagctcttgctttccttcaaaatttcattttcaactt 403  Q
    |||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10499835 ttattcatcaaaaactgttttgttatc-----cattcacattccagtcatagctcttgctttccttcaaaatttcattttcaactt 10499915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 179 - 258
Target Start/End: Original strand, 9998787 - 9998865
Alignment:
Q  179 aaacttcaaagatgccaattgcatttttacgtgtgaaacttttctttgtatatttattatttagtcagatgtggatccat 258  Q
    |||||||||||||||||||||| |||| | ||||| |||| |||||||||||| |||||||| ||| ||||||| |||||    
T  9998787 aaacttcaaagatgccaattgc-ttttaaagtgtgcaactattctttgtatatctattattttgtctgatgtgggtccat 9998865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 179 - 258
Target Start/End: Original strand, 10108553 - 10108631
Alignment:
Q  179 aaacttcaaagatgccaattgcatttttacgtgtgaaacttttctttgtatatttattatttagtcagatgtggatccat 258  Q
    |||||||||||||||||||||| |||| | ||||| |||| |||||||||||| |||||||| ||| ||||||| |||||    
T  10108553 aaacttcaaagatgccaattgc-ttttaaagtgtgcaactattctttgtatatctattattttgtctgatgtgggtccat 10108631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 179 - 258
Target Start/End: Original strand, 10229792 - 10229870
Alignment:
Q  179 aaacttcaaagatgccaattgcatttttacgtgtgaaacttttctttgtatatttattatttagtcagatgtggatccat 258  Q
    |||||||||||||||||||||| |||| | ||||| |||| |||||||||||| |||||||| ||| ||||||| |||||    
T  10229792 aaacttcaaagatgccaattgc-ttttaaagtgtgcaactattctttgtatatctattattttgtctgatgtgggtccat 10229870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 219 - 273
Target Start/End: Original strand, 10218873 - 10218927
Alignment:
Q  219 tttctttgtatatttattatttagtcagatgtggatccataaaccattaatgagc 273  Q
    |||||||||||||||||||||| ||||||||| | |||||||||||||| |||||    
T  10218873 tttctttgtatatttattattttgtcagatgtagttccataaaccattattgagc 10218927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 219 - 273
Target Start/End: Original strand, 10255782 - 10255836
Alignment:
Q  219 tttctttgtatatttattatttagtcagatgtggatccataaaccattaatgagc 273  Q
    |||||||||||||||||||||| ||||||||| | |||||||||||||| |||||    
T  10255782 tttctttgtatatttattattttgtcagatgtagttccataaaccattattgagc 10255836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 219 - 267
Target Start/End: Original strand, 10227875 - 10227923
Alignment:
Q  219 tttctttgtatatttattatttagtcagatgtggatccataaaccatta 267  Q
    |||||||||||||||||||||| ||||||||| | ||||||||||||||    
T  10227875 tttctttgtatatttattattttgtcagatgtagttccataaaccatta 10227923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 51
Target Start/End: Original strand, 10516228 - 10516267
Alignment:
Q  12 ataggagttgaataaataaaggtcaaatactacgatatct 51  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  10516228 ataggagttgaataaataatggtcaaatactacgatatct 10516267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 184 - 257
Target Start/End: Original strand, 10218539 - 10218611
Alignment:
Q  184 tcaaagatgccaattgcatttttacgtgtgaaacttttctttgtatatttattatttagtcagatgtggatcca 257  Q
    ||||||||||||||||| |||| | ||||| |||| |||||||||||| |||||||| ||| ||||||| ||||    
T  10218539 tcaaagatgccaattgc-ttttaaagtgtgcaactattctttgtatatctattattttgtctgatgtgggtcca 10218611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 219 - 273
Target Start/End: Original strand, 10018288 - 10018340
Alignment:
Q  219 tttctttgtatatttattatttagtcagatgtggatccataaaccattaatgagc 273  Q
    |||||||||||||||||||||  ||||||||| | |||||||||||||| |||||    
T  10018288 tttctttgtatatttattatt--gtcagatgtagttccataaaccattattgagc 10018340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 179 - 258
Target Start/End: Original strand, 10233387 - 10233465
Alignment:
Q  179 aaacttcaaagatgccaattgcatttttacgtgtgaaacttttctttgtatatttattatttagtcagatgtggatccat 258  Q
    |||||||||| ||||||||||| |||| | ||||| |||| |||||||||||| ||||||||  || ||||||| |||||    
T  10233387 aaacttcaaaaatgccaattgc-ttttaaagtgtgcaactattctttgtatatctattattttttctgatgtgggtccat 10233465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 51
Target Start/End: Original strand, 21408930 - 21408961
Alignment:
Q  20 tgaataaataaaggtcaaatactacgatatct 51  Q
    ||||||||||||||||||||||||||||||||    
T  21408930 tgaataaataaaggtcaaatactacgatatct 21408961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 273
Target Start/End: Original strand, 10218155 - 10218209
Alignment:
Q  219 tttctttgtatatttattatttagtcagatgtggatccataaaccattaatgagc 273  Q
    |||||||||||||||||| ||  ||||||||| | |||||||||||||| |||||    
T  10218155 tttctttgtatatttattgttatgtcagatgtagctccataaaccattattgagc 10218209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 262
Target Start/End: Original strand, 10439638 - 10439691
Alignment:
Q  209 gtgtgaaacttttctttgtatatttattatttagtcagatgtggatccataaac 262  Q
    ||||| |||||||||||| |||| |||||||| ||| ||||||| |||||||||    
T  10439638 gtgtgcaacttttctttggatatctattattttgtctgatgtgggtccataaac 10439691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 10657502 - 10657539
Alignment:
Q  14 aggagttgaataaataaaggtcaaatactacgatatct 51  Q
    ||||||||||||||||||||||||||  ||||||||||    
T  10657502 aggagttgaataaataaaggtcaaattatacgatatct 10657539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 179 - 258
Target Start/End: Original strand, 26825746 - 26825824
Alignment:
Q  179 aaacttcaaagatgccaattgcatttttacgtgtgaaacttttctttgtatatttattatttagtcagatgtggatccat 258  Q
    |||||||||||||||||||||| |||| | ||||| |||| |||||||||||| |||||||| ||| ||||||| |||||    
T  26825746 aaacttcaaagatgccaattgc-ttttaaagtgtgcaactattctttgtatatctattattttgtctgatgtgggtccat 26825824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 219 - 273
Target Start/End: Original strand, 26798344 - 26798398
Alignment:
Q  219 tttctttgtatatttattatttagtcagatgtggatccataaaccattaatgagc 273  Q
    |||||||||||||||||||||| ||||||||| | |||||||||||||| |||||    
T  26798344 tttctttgtatatttattattttgtcagatgtagttccataaaccattattgagc 26798398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 219 - 267
Target Start/End: Original strand, 26801252 - 26801300
Alignment:
Q  219 tttctttgtatatttattatttagtcagatgtggatccataaaccatta 267  Q
    |||||||||||||||||||||| ||||||||| | ||||||||||||||    
T  26801252 tttctttgtatatttattattttgtcagatgtagttccataaaccatta 26801300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 219 - 267
Target Start/End: Original strand, 26808802 - 26808850
Alignment:
Q  219 tttctttgtatatttattatttagtcagatgtggatccataaaccatta 267  Q
    |||||||||||||||||||||| ||||||||| | ||||||||||||||    
T  26808802 tttctttgtatatttattattttgtcagatgtagttccataaaccatta 26808850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 219 - 267
Target Start/End: Original strand, 26816192 - 26816240
Alignment:
Q  219 tttctttgtatatttattatttagtcagatgtggatccataaaccatta 267  Q
    |||||||||||||||||||||| ||||||||| | ||||||||||||||    
T  26816192 tttctttgtatatttattattttgtcagatgtagttccataaaccatta 26816240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 219 - 267
Target Start/End: Original strand, 26823829 - 26823877
Alignment:
Q  219 tttctttgtatatttattatttagtcagatgtggatccataaaccatta 267  Q
    |||||||||||||||||||||| ||||||||| | ||||||||||||||    
T  26823829 tttctttgtatatttattattttgtcagatgtagttccataaaccatta 26823877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 184 - 258
Target Start/End: Original strand, 26798010 - 26798083
Alignment:
Q  184 tcaaagatgccaattgcatttttacgtgtgaaacttttctttgtatatttattatttagtcagatgtggatccat 258  Q
    ||||||||||||||||| |||| | ||||| |||| |||||||||||| |||||||| ||| ||||||| |||||    
T  26798010 tcaaagatgccaattgc-ttttaaagtgtgcaactattctttgtatatctattattttgtctgatgtgggtccat 26798083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 273
Target Start/End: Original strand, 26797626 - 26797680
Alignment:
Q  219 tttctttgtatatttattatttagtcagatgtggatccataaaccattaatgagc 273  Q
    |||||||||||||||||| ||  ||||||||| | |||||||||||||| |||||    
T  26797626 tttctttgtatatttattgttatgtcagatgtagctccataaaccattattgagc 26797680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 273
Target Start/End: Original strand, 26891605 - 26891659
Alignment:
Q  219 tttctttgtatatttattatttagtcagatgtggatccataaaccattaatgagc 273  Q
    ||||||| |||| ||||||||| ||||||||| ||||||||| ||||||||||||    
T  26891605 tttctttatatacttattattttgtcagatgtagatccataatccattaatgagc 26891659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 250
Target Start/End: Original strand, 11484131 - 11484171
Alignment:
Q  210 tgtgaaacttttctttgtatatttattatttagtcagatgt 250  Q
    |||| |||||||||||||||||||||||||| |||||||||    
T  11484131 tgtgcaacttttctttgtatatttattattttgtcagatgt 11484171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 19294483 - 19294443
Alignment:
Q  11 cataggagttgaataaataaaggtcaaatactacgatatct 51  Q
    ||||| || |||||||||||||||||||||||| |||||||    
T  19294483 catagtagatgaataaataaaggtcaaatactatgatatct 19294443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University