View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9461_low_24 (Length: 418)

Name: NF9461_low_24
Description: NF9461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9461_low_24
NF9461_low_24
[»] chr7 (14 HSPs)
chr7 (16-398)||(5767992-5768376)
chr7 (17-365)||(39066831-39067180)
chr7 (16-398)||(25419503-25419873)
chr7 (186-397)||(47233751-47233964)
chr7 (186-412)||(44393667-44393890)
chr7 (214-272)||(47932975-47933033)
chr7 (16-145)||(39063883-39064000)
chr7 (16-92)||(39073293-39073369)
chr7 (119-157)||(17026582-17026620)
chr7 (119-157)||(39073319-39073357)
chr7 (119-157)||(47140379-47140417)
chr7 (20-92)||(17026574-17026646)
chr7 (119-158)||(39068633-39068672)
chr7 (16-92)||(47936400-47936476)
[»] chr5 (8 HSPs)
chr5 (17-398)||(36990874-36991257)
chr5 (186-398)||(21604997-21605209)
chr5 (191-341)||(37301975-37302125)
chr5 (16-186)||(11381258-11381413)
chr5 (16-153)||(10180439-10180564)
chr5 (16-83)||(21605269-21605335)
chr5 (16-59)||(37302214-37302257)
chr5 (119-157)||(10180451-10180489)
[»] chr4 (20 HSPs)
chr4 (29-398)||(46092146-46092517)
chr4 (29-398)||(46134671-46135042)
chr4 (16-398)||(2504929-2505299)
chr4 (189-398)||(53830433-53830644)
chr4 (191-398)||(34737730-34737936)
chr4 (186-341)||(21802896-21803051)
chr4 (186-341)||(2500631-2500786)
chr4 (186-341)||(21632756-21632912)
chr4 (186-341)||(5430709-5430868)
chr4 (186-338)||(20036282-20036435)
chr4 (22-186)||(27256579-27256730)
chr4 (16-184)||(26376848-26377001)
chr4 (19-184)||(46140551-46140701)
chr4 (17-157)||(51868294-51868422)
chr4 (214-272)||(43943462-43943520)
chr4 (19-83)||(21632972-21633036)
chr4 (17-83)||(21802770-21802836)
chr4 (17-59)||(34738025-34738067)
chr4 (119-157)||(34738989-34739027)
chr4 (16-59)||(53830735-53830778)
[»] chr6 (10 HSPs)
chr6 (16-398)||(13433381-13433763)
chr6 (282-341)||(16712096-16712155)
chr6 (214-272)||(16857232-16857290)
chr6 (86-153)||(18877422-18877489)
chr6 (119-157)||(18880850-18880888)
chr6 (214-272)||(26615320-26615380)
chr6 (214-272)||(26721248-26721308)
chr6 (17-86)||(18877365-18877434)
chr6 (16-65)||(8643582-8643631)
chr6 (24-92)||(18880846-18880914)
[»] chr2 (15 HSPs)
chr2 (16-398)||(7574019-7574401)
chr2 (16-398)||(16668614-16668984)
chr2 (194-404)||(41646629-41646842)
chr2 (265-331)||(43564238-43564304)
chr2 (265-334)||(29455448-29455517)
chr2 (16-158)||(29455078-29455206)
chr2 (16-92)||(37904068-37904144)
chr2 (16-92)||(22990002-22990078)
chr2 (119-158)||(31618576-31618615)
chr2 (16-91)||(37777734-37777808)
chr2 (119-157)||(29752927-29752965)
chr2 (16-86)||(31618557-31618627)
chr2 (119-153)||(6414355-6414389)
chr2 (119-157)||(40653675-40653713)
chr2 (22-59)||(41646932-41646969)
[»] chr1 (8 HSPs)
chr1 (16-398)||(13786061-13786443)
chr1 (16-398)||(25807699-25808082)
chr1 (185-347)||(23726006-23726167)
chr1 (194-398)||(22912459-22912662)
chr1 (16-92)||(39621646-39621722)
chr1 (119-157)||(39621658-39621696)
chr1 (119-154)||(29679061-29679096)
chr1 (17-62)||(29679050-29679095)
[»] chr3 (18 HSPs)
chr3 (16-398)||(52349558-52349940)
chr3 (186-398)||(48266265-48266478)
chr3 (186-398)||(35870343-35870557)
chr3 (186-321)||(26215284-26215420)
chr3 (19-157)||(10176644-10176769)
chr3 (214-272)||(5884423-5884481)
chr3 (214-272)||(54945777-54945835)
chr3 (86-145)||(33519156-33519215)
chr3 (16-92)||(3744444-3744520)
chr3 (119-157)||(3744470-3744508)
chr3 (119-156)||(3738554-3738591)
chr3 (19-92)||(26297655-26297728)
chr3 (17-83)||(346609-346676)
chr3 (304-412)||(26215432-26215538)
chr3 (16-83)||(35870216-35870283)
chr3 (119-157)||(26297681-26297719)
chr3 (16-56)||(33519233-33519273)
chr3 (16-92)||(54949201-54949277)
[»] chr8 (21 HSPs)
chr8 (186-341)||(8150478-8150633)
chr8 (186-341)||(10186354-10186509)
chr8 (186-412)||(20171957-20172180)
chr8 (195-341)||(4138333-4138479)
chr8 (265-334)||(918949-919018)
chr8 (186-261)||(11428184-11428260)
chr8 (17-157)||(14597427-14597555)
chr8 (288-341)||(11428129-11428182)
chr8 (16-86)||(12274213-12274283)
chr8 (19-80)||(31686159-31686220)
chr8 (16-83)||(10186227-10186294)
chr8 (17-83)||(4138191-4138257)
chr8 (16-62)||(11428342-11428388)
chr8 (119-157)||(28841614-28841652)
chr8 (18-92)||(32663981-32664055)
chr8 (119-157)||(32663991-32664029)
chr8 (119-158)||(11428337-11428376)
chr8 (119-153)||(9083151-9083185)
chr8 (113-146)||(12274296-12274329)
chr8 (20-92)||(28841606-28841678)
chr8 (16-88)||(32207844-32207915)
[»] scaffold0516 (1 HSPs)
scaffold0516 (185-341)||(3246-3402)
[»] scaffold0045 (1 HSPs)
scaffold0045 (16-184)||(1266-1419)
[»] scaffold0316 (1 HSPs)
scaffold0316 (16-80)||(5480-5544)
[»] scaffold0182 (1 HSPs)
scaffold0182 (214-272)||(10171-10229)
[»] scaffold0061 (3 HSPs)
scaffold0061 (103-157)||(54073-54127)
scaffold0061 (119-157)||(46384-46422)
scaffold0061 (23-92)||(46359-46427)
[»] scaffold0017 (3 HSPs)
scaffold0017 (103-157)||(144507-144561)
scaffold0017 (119-157)||(152365-152403)
scaffold0017 (23-92)||(152360-152428)


Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 16 - 398
Target Start/End: Complemental strand, 5768376 - 5767992
Alignment:
Q  16 atatatacatgtattctaacctacatttttcctatgtgtcacctcacaaacatccccctttctaactatttttctaactctctctttatatgcattatct 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||    
T  5768376 atatatacatgtattctaacctacatttttcctatgtgtcacctcacaaacatccccctttctaactatttttctaactatctctttatatgcattctct 5768277  T
Q  116 ctcattctaagctacactttgcttatgtgtcacctcaccaataattcttatttcttcatatgaattttatttactatctatctttcattttccatcagtt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5768276 ctcattctaagctacactttgcttatgtgtcacctcaccaataattcttatttcttcatatgaattttatttactatctatctttcattttccatcagtt 5768177  T
Q  216 gcaaaaacactccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatattgaggggttacattttaaaattattcat 315  Q
     ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  5768176 acaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatcaattttattaatattgaggggttacattttaaaattattcat 5768077  T
Q  316 attcttaatcaatcctcttaca--cacaagtttattactatatagctcctcannnnnnnctaagcttatatatatgttgcttatg 398  Q
    ||||||||||||||||||||||  |||||||||||||||||| |||||||||       ||||||||||||||||||||||||||    
T  5768076 attcttaatcaatcctcttacacacacaagtttattactataaagctcctcatttttttctaagcttatatatatgttgcttatg 5767992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 17 - 365
Target Start/End: Complemental strand, 39067180 - 39066831
Alignment:
Q  17 tatatacatgtattctaacctacatttttcctatgtgtcacctcacaaacatccccctttctaactatttttctaactctctctttatatgcattatctc 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  39067180 tatatacatgtattctaacctacatttttcctatgtgtcacctcaccaacatccccctttctaactatttttctaactatctctttatatgcattctctc 39067081  T
Q  117 tcattctaagctacactttgcttatgtgtcacctcaccaataattcttatttcttcatatgaattttatttactatctatctttcattttccatcagttg 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||     
T  39067080 tcattctaagctacactttgcttatgtgtcacctcaccaataattcttatttctt-atatgaattttatttactatctatctttcattttccatcagtta 39066982  T
Q  217 caaaaacactccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatattgaggggttacattttaaaattattcata 316  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39066981 caaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatattgaggggttacattttaaaattattcata 39066882  T
Q  317 ttcttaatcaatcctcttacac--acaagtttattactatatagctcctca 365  Q
    ||||||||||||||||||||||  |||||||||||||||||  ||||||||    
T  39066881 ttcttaatcaatcctcttacacatacaagtttattactataaggctcctca 39066831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 16 - 398
Target Start/End: Complemental strand, 25419873 - 25419503
Alignment:
Q  16 atatatacatgtattctaacctacatttttcctatgtgtcacctcacaaacatccccctttctaactatttttctaactctctctttatatgcattatct 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||             |||||||||| |||||||| ||||||| |||    
T  25419873 atatatacatgtattctaacctacatttttcctatgtgtcacctcaccaacatccc-------------ttttctaactatctctttacatgcattctct 25419787  T
Q  116 ctcattctaagctacactttgcttatgtgtcacctcaccaataattcttatttcttcatatgaattttatttactatctatctttcattttccatcagtt 215  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  25419786 ctcattctaagctacattttgcttatgtgtcacctcaccaataattcttatttctt-atatgaattttatttactatctatctttcattttccatcagtt 25419688  T
Q  216 gcaaaaacactccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatattgaggggttacattttaaaattattcat 315  Q
     ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25419687 acaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatattgaggggttacattttaaaattattcat 25419588  T
Q  316 attcttaatcaatcctcttaca--cacaagtttattactatatagctcctcannnnnnnctaagcttatatatatgttgcttatg 398  Q
    ||||||||||||||||||||||  ||||| |||||||||||| |||||||||       ||||||||||||||||||||||||||    
T  25419587 attcttaatcaatcctcttacacacacaaatttattactataaagctcctcatttttttctaagcttatatatatgttgcttatg 25419503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 186 - 397
Target Start/End: Complemental strand, 47233964 - 47233751
Alignment:
Q  186 ttactatctatctttcattttccatcagttgcaaaaacactccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaat 285  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47233964 ttactatctatctttcattttccatcagttgcaaaaacacttcatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaat 47233865  T
Q  286 attgaggggttacattttaaaattattcatattcttaatcaatcctcttaca--cacaagtttattactatatagctcctcannnnnnnctaagcttata 383  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||        ||||||||||    
T  47233864 attaaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctcatttttttataagcttata 47233765  T
Q  384 tatatgttgcttat 397  Q
    ||||||||||||||    
T  47233764 tatatgttgcttat 47233751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 186 - 412
Target Start/End: Original strand, 44393667 - 44393890
Alignment:
Q  186 ttactatcta-tctttcattttccatcagttgcaaaaacactccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaa 284  Q
    |||||||||| |||||||||| |||||| ||| |||||| ||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  44393667 ttactatctaatctttcatttcccatcaattggaaaaactctctatttacttcacttcatggaagttacacaatgaatgtattataatccattttattaa 44393766  T
Q  285 tattgaggggttacattttaaaattattcatattcttaatcaatcctctt--acacacaagtttattactatatagctcctcannnnnnnctaagcttat 382  Q
    || ||||||||| ||||||||||||||||||||||||| |||||| ||||  ||||||||||   |||||||| |||||||||       ||||||| ||    
T  44393767 tagtgaggggtttcattttaaaattattcatattcttagtcaatcatcttacacacacaagt---ttactataaagctcctca---ttttctaagctcat 44393860  T
Q  383 atatatgttgcttatgatgtccatctcatt 412  Q
    |||||||||||||||| | ||| |||||||    
T  44393861 atatatgttgcttatgttatccttctcatt 44393890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 214 - 272
Target Start/End: Complemental strand, 47933033 - 47932975
Alignment:
Q  214 ttgcaaaaacactccatttacttcacttcatgcaagttacacaatgaatgcattataat 272  Q
    |||||||| |||| ||||||||||||||||||||||||  |||||||||||||||||||    
T  47933033 ttgcaaaagcactgcatttacttcacttcatgcaagttgtacaatgaatgcattataat 47932975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 145
Target Start/End: Complemental strand, 39064000 - 39063883
Alignment:
Q  16 atatatacatgtattctaacctacatttttcctatgtgtcacctcacaaacatccccctttctaactatttttctaactctctctttatatgcattatct 115  Q
    ||||||||||||||||||||||||||||| | ||||||||| || || ||   | ||||||||||||||||            ||||| ||||||| |||    
T  39064000 atatatacatgtattctaacctacattttgcttatgtgtcatcttaccaatgcctccctttctaactattt------------ctttacatgcattctct 39063913  T
Q  116 ctcattctaagctacactttgcttatgtgt 145  Q
    |||||||||||||||||||| |||||||||    
T  39063912 ctcattctaagctacactttacttatgtgt 39063883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 39073369 - 39073293
Alignment:
Q  16 atatatacatgtattctaacctacatttttcctatgtgtcacctcacaaacatccccctttctaactatttttctaa 92  Q
    ||||||||||||||||||||||||| ||| | ||||||||||||||| ||   |||||| |||||||| ||||||||    
T  39073369 atatatacatgtattctaacctacactttgcttatgtgtcacctcaccaattcccccctctctaactaattttctaa 39073293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 119 - 157
Target Start/End: Original strand, 17026582 - 17026620
Alignment:
Q  119 attctaagctacactttgcttatgtgtcacctcaccaat 157  Q
    |||||||||||||||||||||||||||||||||||||||    
T  17026582 attctaagctacactttgcttatgtgtcacctcaccaat 17026620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 119 - 157
Target Start/End: Complemental strand, 39073357 - 39073319
Alignment:
Q  119 attctaagctacactttgcttatgtgtcacctcaccaat 157  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  39073357 attctaacctacactttgcttatgtgtcacctcaccaat 39073319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 119 - 157
Target Start/End: Original strand, 47140379 - 47140417
Alignment:
Q  119 attctaagctacactttgcttatgtgtcacctcaccaat 157  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  47140379 attctaaactacactttgcttatgtgtcacctcaccaat 47140417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 17026574 - 17026646
Alignment:
Q  20 atacatgtattctaacctacatttttcctatgtgtcacctcacaaacatccccctttctaactatttttctaa 92  Q
    ||||||||||||||| ||||| ||| | ||||||||||||||| ||   |||||| |||||||| ||||||||    
T  17026574 atacatgtattctaagctacactttgcttatgtgtcacctcaccaattcccccctctctaactaattttctaa 17026646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 119 - 158
Target Start/End: Complemental strand, 39068672 - 39068633
Alignment:
Q  119 attctaagctacactttgcttatgtgtcacctcaccaata 158  Q
    ||||||||||||||||||||||| ||||||||||| ||||    
T  39068672 attctaagctacactttgcttatatgtcacctcacaaata 39068633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 47936476 - 47936400
Alignment:
Q  16 atatatacatgtattctaacctacatttttcctatgtgtcacctcacaaacatccccctttctaactatttttctaa 92  Q
    ||||||||||||||||||| ||||| ||| | ||  ||||||| ||| ||   ||||||||||||||| ||||||||    
T  47936476 atatatacatgtattctaagctacactttacttacatgtcaccacaccaatgcccccctttctaactaattttctaa 47936400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 17 - 398
Target Start/End: Original strand, 36990874 - 36991257
Alignment:
Q  17 tatatacatgtattctaacctacatttttcctatgtgtcacctcacaaacatccccctttctaactatttttctaactctctctttatatgcattatctc 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  36990874 tatatacatgtattctaacctacatttttcctatgtgtcacctcacaaacatccccctttctaactatttttctaactatctctttatatgcattctctc 36990973  T
Q  117 tcattctaagctacactttgcttatgtgtcacctcaccaataattcttatttcttcatatgaattttatttactatctatctttcattttccatcagttg 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  36990974 tcattctaagctacactttgcttatgtgtcacctcaccaataattcttatttcttcatatgaattttatttactatctatctttcattttccatcagtta 36991073  T
Q  217 caaaaacactccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatattgaggggttacattttaaaattattcata 316  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  36991074 caaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatctattttattaatattgaggggttacattttaaaattattcata 36991173  T
Q  317 ttcttaatcaatcctctt--acacacaagtttattactatatagctcctcannnnnnnctaagcttatatatatgttgcttatg 398  Q
    ||||||||||||||||||  ||||||||||||||||||||| |||||||||       ||||||||||||||||||||||||||    
T  36991174 ttcttaatcaatcctcttacacacacaagtttattactataaagctcctcatttttttctaagcttatatatatgttgcttatg 36991257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 186 - 398
Target Start/End: Complemental strand, 21605209 - 21604997
Alignment:
Q  186 ttactatctatctttcattttccatcagttgcaaaaacactccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaat 285  Q
    |||||||||||||||||||||||||  | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21605209 ttactatctatctttcattttccattggctgcaaaaacacttcatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaat 21605110  T
Q  286 attgaggggttacattttaaaattattcatattcttaatcaatcctcttaca--cacaagtttattactatatagctcctcannnnnnnctaagcttata 383  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||       |||||||  ||    
T  21605109 attgaggggttaaattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctcatttttttctaagct--ta 21605012  T
Q  384 tatatgttgcttatg 398  Q
    |||||||||||||||    
T  21605011 tatatgttgcttatg 21604997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 191 - 341
Target Start/End: Complemental strand, 37302125 - 37301975
Alignment:
Q  191 atctatctttcattttccatcagttgcaaaaacactccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatattga 290  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||     
T  37302125 atctatctttcatttcccatcatttgcaaaaacactccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaataatgg 37302026  T
Q  291 ggggttacattttaaaattattcatattcttaatcaatcctcttacacaca 341  Q
     ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  37302025 agggttacattttaaaattattcatattcttaatcaatccacttacacaca 37301975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 16 - 186
Target Start/End: Original strand, 11381258 - 11381413
Alignment:
Q  16 atatatacatgtattctaacctacatttttcctatgtgtcacctcacaaacatccccctttctaactatttttctaactctctctttatatgcattatct 115  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||            || ||| ||||||||  |    
T  11381258 atatatacatgtattctaacctacattttgcctatgtgtaacctcacaaacatccccctttctaactatt------------tccttacatgcatta--t 11381343  T
Q  116 ctcattctaagctacactttgcttatgtgtcacctcaccaataattcttatttcttcatatgaattttatt 186  Q
    |||||| ||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  11381344 ctcattataagcaagactttgcttatgtgtcacctcaccaataattcttatttctt-atatgaattttatt 11381413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 16 - 153
Target Start/End: Original strand, 10180439 - 10180564
Alignment:
Q  16 atatatacatgtattctaacctacatttttcctatgtgtcacctcacaaacatccccctttctaactatttttctaactctctctttatatgcattatct 115  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||| ||   | |||||||||| |||||            ||||| ||| ||| |||    
T  10180439 atatatacatgtattctaacctacattttgcttatgtgtcacctcaccaatgcctccctttctaattattt------------ctttacatgtattctct 10180526  T
Q  116 ctcattctaagctacactttgcttatgtgtcacctcac 153  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  10180527 ctcattctaagctacactttgcttatgtgtcacttcac 10180564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 21605335 - 21605269
Alignment:
Q  16 atatatacatgtattctaacctacatttttcctatgtgtcacctcacaaacatccccctttctaacta 83  Q
    ||||||| || |||||||| |||||||||||||||||||||||| || || | |||||||||||||||    
T  21605335 atatatatatatattctaagctacatttttcctatgtgtcaccttaccaata-ccccctttctaacta 21605269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 37302257 - 37302214
Alignment:
Q  16 atatatacatgtattctaacctacatttttcctatgtgtcacct 59  Q
    ||||||||||||||||||||||||||||| | ||||||||||||    
T  37302257 atatatacatgtattctaacctacattttgcatatgtgtcacct 37302214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 157
Target Start/End: Original strand, 10180451 - 10180489
Alignment:
Q  119 attctaagctacactttgcttatgtgtcacctcaccaat 157  Q
    ||||||| ||||| |||||||||||||||||||||||||    
T  10180451 attctaacctacattttgcttatgtgtcacctcaccaat 10180489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 300; Significance: 1e-168; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 29 - 398
Target Start/End: Original strand, 46092146 - 46092517
Alignment:
Q  29 ttctaacctacatttttcctatgtgtcacctcacaaacatccccctttctaactatttttctaactctctctttatatgcattatctctcattctaagct 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  46092146 ttctaacctacatttttcctatgtgtcacctcacaaacatccccctttcaaactatttttctaactatctctttatatgcattctctctcattctaagct 46092245  T
Q  129 acactttgcttatgtgtcacctcaccaataattcttatttcttcatatgaattttatttactatctatctttcattttccatcagttgcaaaaacactcc 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||   ||    
T  46092246 acactttgcttatgtgtcacctcaccaataattcttatttcttcatatgaattttatttcctatctatctttcattttccatcggttacaaaaacttgcc 46092345  T
Q  229 atttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaat 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46092346 atttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaat 46092445  T
Q  329 cctctt--acacacaagtttattactatatagctcctcannnnnnnctaagcttatatatatgttgcttatg 398  Q
    ||||||  ||||||||||||||||||||| |||||||||       ||||||||||||||||||||||||||    
T  46092446 cctcttacacacacaagtttattactataaagctcctcatttttttctaagcttatatatatgttgcttatg 46092517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 29 - 398
Target Start/End: Original strand, 46134671 - 46135042
Alignment:
Q  29 ttctaacctacatttttcctatgtgtcacctcacaaacatccccctttctaactatttttctaactctctctttatatgcattatctctcattctaagct 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  46134671 ttctaacctacatttttcctatgtgtcacctcacaaacatccccctttcaaactatttttctaactatctctttatatgcattctctctcattctaagct 46134770  T
Q  129 acactttgcttatgtgtcacctcaccaataattcttatttcttcatatgaattttatttactatctatctttcattttccatcagttgcaaaaacactcc 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||   ||    
T  46134771 acactttgcttatgtgtcacctcaccaataattcttatttcttcatatgaattttatttcctatctatctttcattttccatcggttacaaaaacttgcc 46134870  T
Q  229 atttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaat 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46134871 atttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaat 46134970  T
Q  329 cctctt--acacacaagtttattactatatagctcctcannnnnnnctaagcttatatatatgttgcttatg 398  Q
    ||||||  ||||||||||||||||||||| |||||||||       ||||||||||||||||||||||||||    
T  46134971 cctcttacacacacaagtttattactataaagctcctcatttttttctaagcttatatatatgttgcttatg 46135042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 16 - 398
Target Start/End: Complemental strand, 2505299 - 2504929
Alignment:
Q  16 atatatacatgtattctaacctacatttttcctatgtgtcacctcacaaacatccccctttctaactatttttctaactctctctttatatgcattatct 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||             |||||||||| |||||||| ||||||| |||    
T  2505299 atatatacatgtattctaacctacatttttcctatgtgtcacctcaccaacatccc-------------ttttctaactatctctttacatgcattctct 2505213  T
Q  116 ctcattctaagctacactttgcttatgtgtcacctcaccaataattcttatttcttcatatgaattttatttactatctatctttcattttccatcagtt 215  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2505212 ctcattctaagctacattttgcttatgtgtcacctcaccaataattcttatttctt-atatgaattttatttactatctatctttcattttccatcagtt 2505114  T
Q  216 gcaaaaacactccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatattgaggggttacattttaaaattattcat 315  Q
     ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2505113 acaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatattgaggggttacattttaaaattattcat 2505014  T
Q  316 attcttaatcaatcctcttaca--cacaagtttattactatatagctcctcannnnnnnctaagcttatatatatgttgcttatg 398  Q
    ||||||||||||||||||||||  ||||| |||||||||||| |||||||||       ||||||||||||||||||||||||||    
T  2505013 attcttaatcaatcctcttacacacacaaatttattactataaagctcctcatttttttctaagcttatatatatgttgcttatg 2504929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 189 - 398
Target Start/End: Complemental strand, 53830644 - 53830433
Alignment:
Q  189 ctatctatctttcattttccatcagttgcaaaaacactccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatatt 288  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53830644 ctatctatctttcattttccatcggttgcaaaaacactctatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatatt 53830545  T
Q  289 gaggggttacattttaaaattattcatattcttaatcaatcctcttaca--cacaagtttattactatatagctcctcannnnnnnctaagcttatatat 386  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||       ||||||||||||||    
T  53830544 gaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctcatttttttctaagcttatatat 53830445  T
Q  387 atgttgcttatg 398  Q
    ||||||||||||    
T  53830444 atgttgcttatg 53830433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 191 - 398
Target Start/End: Complemental strand, 34737936 - 34737730
Alignment:
Q  191 atctatctttcattttccatcagttgcaaaaacactccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatattga 290  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||    
T  34737936 atctatctttcattttccatcagttgcaaaaacactccatctacttcacttcatgcaagttacacaatgaatgcattataatccattttattaacaatga 34737837  T
Q  291 ggggttacattttaaaattattcatattcttaatcaatcctcttacacaca--agtttattactatatagctcctcannnnnnnctaagcttatatatat 388  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||   ||||| |||||||||       ||||||||||||||||    
T  34737836 ggggttacattttaaaattattcatattcttgatcaatcctcttacacacacaagttta---ctataaagctcctcatttttttctaagcttatatatat 34737740  T
Q  389 gttgcttatg 398  Q
    ||||||||||    
T  34737739 gttgcttatg 34737730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 186 - 341
Target Start/End: Original strand, 21802896 - 21803051
Alignment:
Q  186 ttactatctatctttcattttccatcagttgcaaaaacactccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaat 285  Q
    |||||||||||||||||||| | |||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  21802896 ttactatctatctttcatttcctatcagttgcaaaaacatttcatttacttcacttcttgcaagttacacaatgaatgcattataatccattttattaat 21802995  T
Q  286 attgaggggttacattttaaaattattcatattcttaatcaatcctcttacacaca 341  Q
    ||||||||||||| |||||||||| ||||||||||||||||||  |||||||||||    
T  21802996 attgaggggttacgttttaaaattgttcatattcttaatcaataatcttacacaca 21803051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 186 - 341
Target Start/End: Complemental strand, 2500786 - 2500631
Alignment:
Q  186 ttactatctatctttcattttccatcagttgcaaaaacactccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaat 285  Q
    ||||||| |||||||||||| ||||| |||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  2500786 ttactatttatctttcatttcccatccgttgcaaaaatacaccatttacttcacttcatgcaagttgcacaatgaatgcattataatccattttattaat 2500687  T
Q  286 attgaggggttacattttaaaattattcatattcttaatcaatcctcttacacaca 341  Q
    |||| | ||||||||||||||||||||  ||||||| |||||||||||||||||||    
T  2500686 attgtgcggttacattttaaaattatttgtattcttgatcaatcctcttacacaca 2500631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 186 - 341
Target Start/End: Complemental strand, 21632912 - 21632756
Alignment:
Q  186 ttactatctatctttcattttccatcagttgcaaaaa-cactccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaa 284  Q
    |||||||||||||||||||||| |||||||||||||| || | ||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||    
T  21632912 ttactatctatctttcattttctatcagttgcaaaaaacatttcatttacttcacttcttgcaagttacacgatgaatgcattatgatccattttattaa 21632813  T
Q  285 tattgaggggttacattttaaaattattcatattcttaatcaatcctcttacacaca 341  Q
    |||||||||||||  |||||||||| ||||||||||||||||||| |||||||||||    
T  21632812 tattgaggggttatgttttaaaattgttcatattcttaatcaatcttcttacacaca 21632756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 186 - 341
Target Start/End: Original strand, 5430709 - 5430868
Alignment:
Q  186 ttactatcta-tctttcattttccatcagttgcaaaaacactccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttat--- 281  Q
    |||||||||| |||||||||| |||||| ||| |||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||       
T  5430709 ttactatctaatctttcatttcccatcaattggaaaaactctccatttacttcacttcatggaagttacacaatgaatgtattataatccattttattaa 5430808  T
Q  282 taatattgaggggttacattttaaaattattcatattcttaatcaatcctcttacacaca 341  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||    
T  5430809 taatagtgaggggttacattttaaaattattcatattcttagtcaatcatcttacacaca 5430868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 186 - 338
Target Start/End: Original strand, 20036282 - 20036435
Alignment:
Q  186 ttactatctatctttcattttccatcagttgcaaaaa-cactccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaa 284  Q
    |||||||||||||||||||| ||||||| || ||||| |||| || ||||||||||||||||||||| || ||||||||||||||||| |||||||||||    
T  20036282 ttactatctatctttcatttcccatcagatgtaaaaaacacttcagttacttcacttcatgcaagttgcataatgaatgcattataattcattttattaa 20036381  T
Q  285 tattgaggggttacattttaaaattattcatattcttaatcaatcctcttacac 338  Q
    |||||||  ||||||||||||||||| |||||||||||||||||||||||||||    
T  20036382 tattgagcagttacattttaaaattaatcatattcttaatcaatcctcttacac 20036435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 22 - 186
Target Start/End: Original strand, 27256579 - 27256730
Alignment:
Q  22 acatgtattctaacctacatttttcctatgtgtcacctcacaaacatccccctttctaactatttttctaactctctctttatatgcattatctctcatt 121  Q
    |||||||||||||||||||||||||||||||||||||| || ||   ||||||||||||||||            ||||||||||||||| |||||||||    
T  27256579 acatgtattctaacctacatttttcctatgtgtcaccttaccaatgcccccctttctaactat------------ctctttatatgcattctctctcatt 27256666  T
Q  122 ctaagctacactttgcttatgtgtcacctcaccaataattcttatttcttcatatgaattttatt 186  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  27256667 ctaaactacactttacttatgtgtcacctcaccaataattcttatttctt-atatgaattttatt 27256730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 16 - 184
Target Start/End: Original strand, 26376848 - 26377001
Alignment:
Q  16 atatatacatgtattctaacctacatttttcctatgtgtcacctcacaaacatccccctttctaactatttttctaactctctctttatatgcattatct 115  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||            || ||| ||||||  |||    
T  26376848 atatatacatgtattctaacctacattttacctatgtgtaacctcacaaacatccccctttctaactatt------------tccttacatgcat--tct 26376933  T
Q  116 ctcattctaagctacactttgcttatgtgtcacctcaccaataattcttatttcttcatatgaatttta 184  Q
    |||||| ||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  26376934 ctcattataagcaagactttgcttatgtgtcacctcaccaataattcttatttctt-atatgaatttta 26377001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 19 - 184
Target Start/End: Complemental strand, 46140701 - 46140551
Alignment:
Q  19 tatacatgtattctaacctacatttttcctatgtgtcacctcacaaacatccccctttctaactatttttctaactctctctttatatgcattatctctc 118  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||            || ||| ||||||  ||||||    
T  46140701 tatacatgtattctaacctacattttacctatgtgtaacctcacaaacatccccctttctaactatt------------tccttacatgcat--tctctc 46140616  T
Q  119 attctaagctacactttgcttatgtgtcacctcaccaataattcttatttcttcatatgaatttta 184  Q
    ||| ||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  46140615 attataagcaagactttgcttatgtgtcacctcaccaataattcttatttctt-atatgaatttta 46140551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 17 - 157
Target Start/End: Original strand, 51868294 - 51868422
Alignment:
Q  17 tatatacatgtattctaacctacatttttcctatgtgtcacctcacaaacatccccctttctaactatttttctaactctctctttatatgcattatctc 116  Q
    ||||||||||||||||||| |||||||| | |||||||||||| || ||   ||||||||||||||||||            ||||||||||||| ||||    
T  51868294 tatatacatgtattctaacatacattttgcttatgtgtcaccttaccaatgcccccctttctaactattt------------ctttatatgcattctctc 51868381  T
Q  117 tcattctaagctacactttgcttatgtgtcacctcaccaat 157  Q
    |||||| ||||||||||||||||| ||||||||||||||||    
T  51868382 tcattccaagctacactttgcttacgtgtcacctcaccaat 51868422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 214 - 272
Target Start/End: Original strand, 43943462 - 43943520
Alignment:
Q  214 ttgcaaaaacactccatttacttcacttcatgcaagttacacaatgaatgcattataat 272  Q
    |||||||| |||| ||||||||||||||||||||||||  |||||||||||||||||||    
T  43943462 ttgcaaaagcactgcatttacttcacttcatgcaagttgtacaatgaatgcattataat 43943520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 21633036 - 21632972
Alignment:
Q  19 tatacatgtattctaacctacatttttcctatgtgtcacctcacaaacatccccctttctaacta 83  Q
    |||||||||||||||| ||||||||| |||||||||||||| || || | |||||||||||||||    
T  21633036 tatacatgtattctaagctacattttgcctatgtgtcaccttaccaatacccccctttctaacta 21632972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 21802770 - 21802836
Alignment:
Q  17 tatatacatgtattctaacctacatttttcctatgtgtcacctcacaaacatccccctttctaacta 83  Q
    |||||||||||||||||| ||||||||  |||||||||||||| || ||   |||||||||||||||    
T  21802770 tatatacatgtattctaagctacatttcgcctatgtgtcaccttaccaatgcccccctttctaacta 21802836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 34738067 - 34738025
Alignment:
Q  17 tatatacatgtattctaacctacatttttcctatgtgtcacct 59  Q
    |||||||||||||||||||||||||||| | ||||||||||||    
T  34738067 tatatacatgtattctaacctacattttgcatatgtgtcacct 34738025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 119 - 157
Target Start/End: Complemental strand, 34739027 - 34738989
Alignment:
Q  119 attctaagctacactttgcttatgtgtcacctcaccaat 157  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  34739027 attctaagctacactttgtttatgtgtcacctcaccaat 34738989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 53830778 - 53830735
Alignment:
Q  16 atatatacatgtattctaacctacatttttcctatgtgtcacct 59  Q
    ||||||| || |||||||| ||||||||||||||||||||||||    
T  53830778 atatatatatatattctaagctacatttttcctatgtgtcacct 53830735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 297; Significance: 1e-167; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 16 - 398
Target Start/End: Complemental strand, 13433763 - 13433381
Alignment:
Q  16 atatatacatgtattctaacctacatttttcctatgtgtcacctcacaaacatccccctttctaactatttttctaactctctctttatatgcattatct 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||||| |||||||| ||||||| |||    
T  13433763 atatatacatgtattctaacctacatttttcctatgtgtcacctcaccaacatccct-tttctaactatttttctaactatctctttacatgcattctct 13433665  T
Q  116 ctcattctaagctacactttgcttatgtgtcacctcaccaataattcttatttcttcatatgaattttatttactatctatctttcattttccatcagtt 215  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  13433664 ctcattctaagctacattttgcttatgtgtcacctcaccaataattcttatttctt-atatgaattttatttactatctatctttcattttccatcagtt 13433566  T
Q  216 gcaaaaacactccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatattgaggggttacattttaaaattattcat 315  Q
     ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13433565 acaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatattgaggggttacattttaaaattattcat 13433466  T
Q  316 attcttaatcaatcctcttaca--cacaagtttattactatatagctcctcannnnnnnctaagcttatatatatgttgcttatg 398  Q
    ||||||||||||||||||||||  ||||| |||||||||||| |||||||||       ||||||||||||||||||||||||||    
T  13433465 attcttaatcaatcctcttacacacacaaatttattactataaagctcctcatttttttctaagcttatatatatgttgcttatg 13433381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 282 - 341
Target Start/End: Complemental strand, 16712155 - 16712096
Alignment:
Q  282 taatattgaggggttacattttaaaattattcatattcttaatcaatcctcttacacaca 341  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  16712155 taatagtgaggggttacattttaaaattattcatattcttaatcaatcatcttacacaca 16712096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 214 - 272
Target Start/End: Original strand, 16857232 - 16857290
Alignment:
Q  214 ttgcaaaaacactccatttacttcacttcatgcaagttacacaatgaatgcattataat 272  Q
    |||||||| |||| ||||||||||||||||||||||||  |||||||||||||||||||    
T  16857232 ttgcaaaagcactgcatttacttcacttcatgcaagttgtacaatgaatgcattataat 16857290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 86 - 153
Target Start/End: Original strand, 18877422 - 18877489
Alignment:
Q  86 tttctaactctctctttatatgcattatctctcattctaagctacactttgcttatgtgtcacctcac 153  Q
    ||||||||| | |||||| ||||||| ||||| |||||| ||||||||||||||||||||||| ||||    
T  18877422 tttctaactatttctttacatgcattctctcttattctaggctacactttgcttatgtgtcacttcac 18877489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 119 - 157
Target Start/End: Original strand, 18880850 - 18880888
Alignment:
Q  119 attctaagctacactttgcttatgtgtcacctcaccaat 157  Q
    |||||||||||||||||||||||||||||||||||||||    
T  18880850 attctaagctacactttgcttatgtgtcacctcaccaat 18880888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 272
Target Start/End: Complemental strand, 26615380 - 26615320
Alignment:
Q  214 ttgcaaaaacactccatttacttcacttcatgcaa--gttacacaatgaatgcattataat 272  Q
    ||||||||||||| |||||||||||||||||||||  |||  |||||||||||||||||||    
T  26615380 ttgcaaaaacacttcatttacttcacttcatgcaattgttgtacaatgaatgcattataat 26615320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 272
Target Start/End: Complemental strand, 26721308 - 26721248
Alignment:
Q  214 ttgcaaaaacactccatttacttcacttcatgcaa--gttacacaatgaatgcattataat 272  Q
    ||||||||||||| |||||||||||||||||||||  |||  |||||||||||||||||||    
T  26721308 ttgcaaaaacacttcatttacttcacttcatgcaattgttgtacaatgaatgcattataat 26721248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 18877365 - 18877434
Alignment:
Q  17 tatatacatgtattctaacctacatttttcctatgtgtcacctcacaaacatccccctttctaactattt 86  Q
    |||||||||||||||||||||||||||| | || ||||||||| || ||   | ||||||||||||||||    
T  18877365 tatatacatgtattctaacctacattttgcttaggtgtcaccttaccaatgcctccctttctaactattt 18877434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 8643631 - 8643582
Alignment:
Q  16 atatatacatgtattctaacctacatttttcctatgtgtcacctcacaaa 65  Q
    ||||||||||||||||||| ||||||||| | ||  ||||||||||||||    
T  8643631 atatatacatgtattctaagctacattttgcttacatgtcacctcacaaa 8643582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 18880846 - 18880914
Alignment:
Q  24 atgtattctaacctacatttttcctatgtgtcacctcacaaacatccccctttctaactatttttctaa 92  Q
    ||||||||||| ||||| ||| | ||||||||||||||| ||   |||||| |||||||| ||||||||    
T  18880846 atgtattctaagctacactttgcttatgtgtcacctcaccaattcccccctctctaactaattttctaa 18880914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 16 - 398
Target Start/End: Complemental strand, 7574401 - 7574019
Alignment:
Q  16 atatatacatgtattctaacctacatttttcctatgtgtcacctcacaaacatccccctttctaactatttttctaactctctctttatatgcattatct 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||||| |||||||| ||||||| |||    
T  7574401 atatatacatgtattctaacctacatttttcctatgtgtcacctcaccaacatccct-tttctaactatttttctaactatctctttacatgcattctct 7574303  T
Q  116 ctcattctaagctacactttgcttatgtgtcacctcaccaataattcttatttcttcatatgaattttatttactatctatctttcattttccatcagtt 215  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  7574302 ctcattctaagctacattttgcttatgtgtcacctcaccaataattcttatttctt-atatgaattttatttactatctatctttcattttccatcagtt 7574204  T
Q  216 gcaaaaacactccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatattgaggggttacattttaaaattattcat 315  Q
     ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7574203 acaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatattgaggggttacattttaaaattattcat 7574104  T
Q  316 attcttaatcaatcctcttaca--cacaagtttattactatatagctcctcannnnnnnctaagcttatatatatgttgcttatg 398  Q
    ||||||||||||||||||||||  ||||| |||||||||||| |||||||||       ||||||||||||||||||||||||||    
T  7574103 attcttaatcaatcctcttacacacacaaatttattactataaagctcctcatttttttctaagcttatatatatgttgcttatg 7574019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 16 - 398
Target Start/End: Complemental strand, 16668984 - 16668614
Alignment:
Q  16 atatatacatgtattctaacctacatttttcctatgtgtcacctcacaaacatccccctttctaactatttttctaactctctctttatatgcattatct 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||             |||||||||| |||||||| ||||||| |||    
T  16668984 atatatacatgtattctaacctacatttttcctatgtgtcacctcaccaacatccc-------------ttttctaactatctctttacatgcattctct 16668898  T
Q  116 ctcattctaagctacactttgcttatgtgtcacctcaccaataattcttatttcttcatatgaattttatttactatctatctttcattttccatcagtt 215  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  16668897 ctcattctaagctacattttgcttatgtgtcacctcaccaataattcttatttctt-atatgaattttatttactatctatctttcattttccatcagtt 16668799  T
Q  216 gcaaaaacactccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatattgaggggttacattttaaaattattcat 315  Q
     ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16668798 acaaaaactctccatttacttcacttcatgcaagttacataatgaatgcattataatccattttattaatattgaggggttacattttaaaattattcat 16668699  T
Q  316 attcttaatcaatcctcttaca--cacaagtttattactatatagctcctcannnnnnnctaagcttatatatatgttgcttatg 398  Q
    |||||| |||||||||||||||  ||||| |||||||||||| |||||||||       ||||||||||||||||||||||||||    
T  16668698 attcttgatcaatcctcttacacacacaaatttattactataaagctcctcatttttttctaagcttatatatatgttgcttatg 16668614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 194 - 404
Target Start/End: Complemental strand, 41646842 - 41646629
Alignment:
Q  194 tatctttcattttccatcagttgcaaaaacactccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatattgaggg 293  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  41646842 tatctttcattttccatcggttgcaaaaacactccatttacttcatttcatgcaagttacacaatgaatgtattttaatccattttattaatattgaggg 41646743  T
Q  294 gttacattttaaaattattcatattcttaatcaatcctcttaca--cacaagtttattactatatagctcctca-nnnnnnnctaagcttatatatatgt 390  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||        ||||||||||||||||||    
T  41646742 gttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctcattttttttctaagcttatatatatgt 41646643  T
Q  391 tgcttatgatgtcc 404  Q
    |||||||| |||||    
T  41646642 tgcttatgttgtcc 41646629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 265 - 331
Target Start/End: Original strand, 43564238 - 43564304
Alignment:
Q  265 attataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcct 331  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43564238 attataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcct 43564304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 265 - 334
Target Start/End: Original strand, 29455448 - 29455517
Alignment:
Q  265 attataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctctt 334  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  29455448 attataatccattttattaatatcgaggggttacattttaaaattattcatattcttaattaatcctctt 29455517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 16 - 158
Target Start/End: Original strand, 29455078 - 29455206
Alignment:
Q  16 atatatacatgtattctaacctacatttttcctatgtgtcacctcacaaacatccccctttctaactatttttctaactctctctttatatgcattatct 115  Q
    ||||||| ||||||||||| |||||||||||||||||||||| |||| || ||||| |||||||||||||            || ||| ||||||  |||    
T  29455078 atatatatatgtattctaagctacatttttcctatgtgtcacttcaccaatatccctctttctaactatt------------tccttacatgcat--tct 29455163  T
Q  116 ctcattctaagctacactttgcttatgtgtcacctcaccaata 158  Q
    |||||| ||||||| ||||||||||||||||||||||||||||    
T  29455164 ctcattataagctatactttgcttatgtgtcacctcaccaata 29455206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 37904144 - 37904068
Alignment:
Q  16 atatatacatgtattctaacctacatttttcctatgtgtcacctcacaaacatccccctttctaactatttttctaa 92  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| ||   |||||| |||||||| ||||||||    
T  37904144 atatatacatgtattctaagctacatttttcctatgtgtcacctcaccaatgcccccctctctaactaattttctaa 37904068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 22990078 - 22990002
Alignment:
Q  16 atatatacatgtattctaacctacatttttcctatgtgtcacctcacaaacatccccctttctaactatttttctaa 92  Q
    |||||||||||||||||||| |||||||| | ||||||||||||||| ||   |||||| |||||||| ||||||||    
T  22990078 atatatacatgtattctaacgtacattttgcttatgtgtcacctcaccaattcccccctctctaactaattttctaa 22990002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 119 - 158
Target Start/End: Complemental strand, 31618615 - 31618576
Alignment:
Q  119 attctaagctacactttgcttatgtgtcacctcaccaata 158  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  31618615 attctaagctacactttgtttatgtgtcacctcaccaata 31618576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 91
Target Start/End: Original strand, 37777734 - 37777808
Alignment:
Q  16 atatatacatgtattctaacctacatttttcctatgtgtcacctcacaaacatccccctttctaactatttttcta 91  Q
    ||||||||||||||||||||||||| ||| | ||  ||||||||||| ||  |||||||||||||||| |||||||    
T  37777734 atatatacatgtattctaacctacactttgcttacatgtcacctcaccaa-ttccccctttctaactaattttcta 37777808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 119 - 157
Target Start/End: Original strand, 29752927 - 29752965
Alignment:
Q  119 attctaagctacactttgcttatgtgtcacctcaccaat 157  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  29752927 attctaaactacactttgcttatgtgtcacctcaccaat 29752965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 31618627 - 31618557
Alignment:
Q  16 atatatacatgtattctaacctacatttttcctatgtgtcacctcacaaacatccccctttctaactattt 86  Q
    ||||||| || |||||||| ||||| |||   ||||||||||||||| || ||||||||||||||||||||    
T  31618627 atatatatatatattctaagctacactttgtttatgtgtcacctcaccaatatccccctttctaactattt 31618557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 153
Target Start/End: Complemental strand, 6414389 - 6414355
Alignment:
Q  119 attctaagctacactttgcttatgtgtcacctcac 153  Q
    ||||||| |||||||||||||||||||||||||||    
T  6414389 attctaaactacactttgcttatgtgtcacctcac 6414355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 157
Target Start/End: Complemental strand, 40653713 - 40653675
Alignment:
Q  119 attctaagctacactttgcttatgtgtcacctcaccaat 157  Q
    |||||||| ||||||||||||||||| ||||||||||||    
T  40653713 attctaagttacactttgcttatgtgccacctcaccaat 40653675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 41646969 - 41646932
Alignment:
Q  22 acatgtattctaacctacatttttcctatgtgtcacct 59  Q
    ||||||||| ||| ||||||||||||||||||||||||    
T  41646969 acatgtattataagctacatttttcctatgtgtcacct 41646932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 16 - 398
Target Start/End: Original strand, 13786061 - 13786443
Alignment:
Q  16 atatatacatgtattctaacctacatttttcctatgtgtcacctcacaaacatccccctttctaactatttttctaactctctctttatatgcattatct 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||||| |||||||| ||||||| |||    
T  13786061 atatatacatgtattctaacctacatttttcctatgtgtcacctcaccaacatccct-tttctaactatttttctaactatctctttacatgcattctct 13786159  T
Q  116 ctcattctaagctacactttgcttatgtgtcacctcaccaataattcttatttcttcatatgaattttatttactatctatctttcattttccatcagtt 215  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  13786160 ctcattctaagctacattttgcttatgtgtcacctcaccaataattcttatttctt-atatgaattttatttactatctatctttcattttccatcagtt 13786258  T
Q  216 gcaaaaacactccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatattgaggggttacattttaaaattattcat 315  Q
     ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13786259 acaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatattgaggggttacattttaaaattattcat 13786358  T
Q  316 attcttaatcaatcctctt--acacacaagtttattactatatagctcctcannnnnnnctaagcttatatatatgttgcttatg 398  Q
    |||||||||||||||||||  |||||||| |||||||||||| |||||||||       ||||||||||||||||||||||||||    
T  13786359 attcttaatcaatcctcttacacacacaaatttattactataaagctcctcatttttttctaagcttatatatatgttgcttatg 13786443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 16 - 398
Target Start/End: Complemental strand, 25808082 - 25807699
Alignment:
Q  16 atatatacatgtattctaacctacatttttcctatgtgtcacctcacaaacatccccctttctaactatttttctaactctctctttatatgcattatct 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||||| |||||||||||||||| |||    
T  25808082 atatatacatgtattctaacctacatttttcctatgtgtcacctcaccaacatccct-tttctaactatttttctaactatctctttatatgcattctct 25807984  T
Q  116 ctcattctaagctacactttgcttatgtgtcacctcaccaataattcttatttcttcatatgaattttatttactatctatctttcattttccatcagtt 215  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||    
T  25807983 ctcattctaagctacattttgcttatgtgtcatctcaccaataattcttatttctt-atatgaattttatttactatctatctttcattttccatcaatt 25807885  T
Q  216 gcaaaaacactccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatattgaggggttacattttaaaattattcat 315  Q
     |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25807884 acaaaaactttccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatattgaggggttacattttaaaattattcat 25807785  T
Q  316 attcttaatcaatcctcttaca--cacaagtttattactatatagctcctca-nnnnnnnctaagcttatatatatgttgcttatg 398  Q
    ||||||||||||||||||||||  |||||||||||||||||| |||||||||        ||||||||||||||||||| ||||||    
T  25807784 attcttaatcaatcctcttacacacacaagtttattactataaagctcctcattttttttctaagcttatatatatgtttcttatg 25807699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 185 - 347
Target Start/End: Complemental strand, 23726167 - 23726006
Alignment:
Q  185 tttactatctatctttcattttccatcagttgcaaaaacactccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaa 284  Q
    |||||||||||||||||||||| |||| |||||||||||||| ||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||    
T  23726167 tttactatctatctttcatttttcatctgttgcaaaaacacttcatttacttcatttcatgcaagttgcacaatgaatgaattataatccattttattaa 23726068  T
Q  285 tattgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacaagttta 347  Q
    |||| |  ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  23726067 tattaaacggttacatttt-aaattattcatattcttaatcaatcctcttgcacacaagttta 23726006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 194 - 398
Target Start/End: Complemental strand, 22912662 - 22912459
Alignment:
Q  194 tatctttcattttccatcag-ttgcaaaaacactccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatattgagg 292  Q
    |||||||||||| ||||||| ||||| ||||||||||||||||||||||| |||| |||||| |||||||||||||||| |||||||||||||| |||||    
T  22912662 tatctttcatttcccatcaggttgcagaaacactccatttacttcacttcttgcatgttacaaaatgaatgcattataaaccattttattaata-tgagg 22912564  T
Q  293 ggttacattttaaaattattcatattcttaatcaatcctcttacacacaagtttattactatatagctcctcannnnnnnctaagcttatatatatgttg 392  Q
     |||||||||||||||||||||||||||||||||||||||||||||||| |  | |||||||  |||||||||       ||||||||||||||||||||    
T  22912563 agttacattttaaaattattcatattcttaatcaatcctcttacacacacgaat-ttactattaagctcctcatttttttctaagcttatatatatgttg 22912465  T
Q  393 cttatg 398  Q
    ||||||    
T  22912464 cttatg 22912459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 39621646 - 39621722
Alignment:
Q  16 atatatacatgtattctaacctacatttttcctatgtgtcacctcacaaacatccccctttctaactatttttctaa 92  Q
    ||||||||||||||||||| ||||| ||| | ||||||||||||||| ||   |||||| |||||||| ||||||||    
T  39621646 atatatacatgtattctaaactacactttgcttatgtgtcacctcaccaattcccccctctctaactaattttctaa 39621722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 119 - 157
Target Start/End: Original strand, 39621658 - 39621696
Alignment:
Q  119 attctaagctacactttgcttatgtgtcacctcaccaat 157  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  39621658 attctaaactacactttgcttatgtgtcacctcaccaat 39621696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 119 - 154
Target Start/End: Original strand, 29679061 - 29679096
Alignment:
Q  119 attctaagctacactttgcttatgtgtcacctcacc 154  Q
    ||||||| ||||||||||||||||||||||||||||    
T  29679061 attctaaactacactttgcttatgtgtcacctcacc 29679096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 29679050 - 29679095
Alignment:
Q  17 tatatacatgtattctaacctacatttttcctatgtgtcacctcac 62  Q
    |||||||||||||||||| ||||| ||| | |||||||||||||||    
T  29679050 tatatacatgtattctaaactacactttgcttatgtgtcacctcac 29679095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 16 - 398
Target Start/End: Original strand, 52349558 - 52349940
Alignment:
Q  16 atatatacatgtattctaacctacatttttcctatgtgtcacctcacaaacatccccctttctaactatttttctaactctctctttatatgcattatct 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||||| |||||||| ||||||| |||    
T  52349558 atatatacatgtattctaacctacatttttcctatgtgtcacctcaccaacatccct-tttctaactatttttctaactatctctttacatgcattctct 52349656  T
Q  116 ctcattctaagctacactttgcttatgtgtcacctcaccaataattcttatttcttcatatgaattttatttactatctatctttcattttccatcagtt 215  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  52349657 ctcattctaagctacattttgcttatgtgtcacctcaccaataattcttatttctt-atatgaattttatttactatctatctttcattttccatcagtt 52349755  T
Q  216 gcaaaaacactccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatattgaggggttacattttaaaattattcat 315  Q
     ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  52349756 acaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatattgaggggttacattttaaaattatttat 52349855  T
Q  316 attcttaatcaatcctctt--acacacaagtttattactatatagctcctcannnnnnnctaagcttatatatatgttgcttatg 398  Q
    |||||||||||||||||||  |||||||| |||||||||||| |||||||||       ||||||||||||||||||||||||||    
T  52349856 attcttaatcaatcctcttacacacacaaatttattactataaagctcctcatttttttctaagcttatatatatgttgcttatg 52349940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 186 - 398
Target Start/End: Original strand, 48266265 - 48266478
Alignment:
Q  186 ttactatctatctttcattttccatcagttgcaaaaacactccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaat 285  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  48266265 ttactatctatctttcattttccatcagttgcaaaaactctccatttactt-acttcatgcaagttacacaatgaatgcattataatccattttattaat 48266363  T
Q  286 attgaggggttacattttaaaattattcatattcttaatcaatcctctt--acacacaagtttattactatatagctcctcannnnnnnctaagcttata 383  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| |||||||||       |||||||||||    
T  48266364 attgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctcatttttttctaagcttata 48266463  T
Q  384 tatatgttgcttatg 398  Q
    |||||||||||||||    
T  48266464 tatatgttgcttatg 48266478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 186 - 398
Target Start/End: Original strand, 35870343 - 35870557
Alignment:
Q  186 ttactatctatctttcattttccatcagttgcaaaaacactccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaat 285  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35870343 ttactatctatctttcattttccatcagttgcgaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaat 35870442  T
Q  286 attgaggggttacattttaaaattattcatattcttaatcaatcctctt--acacacaagtttattactatatagctcctcannnnnnnctaagcttata 383  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| || ||||||       |||| ||||||    
T  35870443 attgagaggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaaggtcctcatttttttctaaacttata 35870542  T
Q  384 tatatgttgcttatg 398  Q
    |||||||||||||||    
T  35870543 tatatgttgcttatg 35870557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 186 - 321
Target Start/End: Original strand, 26215284 - 26215420
Alignment:
Q  186 ttactatcta-tctttcattttccatcagttgcaaaaacactccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaa 284  Q
    |||||||||| ||||||||||||||||| ||| |||||| ||||||||||||||||||||| |||||||||||||||||  |||||||||||||||||||    
T  26215284 ttactatctaatctttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaatgaatgtgttataatccattttattaa 26215383  T
Q  285 tattgaggggttacattttaaaattattcatattctt 321  Q
    ||  |||||||||||||||||||||||||||||||||    
T  26215384 tagcgaggggttacattttaaaattattcatattctt 26215420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 19 - 157
Target Start/End: Complemental strand, 10176769 - 10176644
Alignment:
Q  19 tatacatgtattctaacctacatttttcctatgtgtcacctcacaaacatccccctttctaactatttttctaactctctctttatatgcattatctctc 118  Q
    |||||||||||||||| |||||||||||||||||||||||| || ||   |||||||||||| |||            |||||| |||||||| ||||||    
T  10176769 tatacatgtattctaaactacatttttcctatgtgtcaccttaccaatg-ccccctttctaattat------------ctctttgtatgcattctctctc 10176683  T
Q  119 attctaagctacactttgcttatgtgtcacctcaccaat 157  Q
    ||||||| ||||||||| |||||||||||||| ||||||    
T  10176682 attctaaactacactttacttatgtgtcacctaaccaat 10176644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 214 - 272
Target Start/End: Complemental strand, 5884481 - 5884423
Alignment:
Q  214 ttgcaaaaacactccatttacttcacttcatgcaagttacacaatgaatgcattataat 272  Q
    |||||||| |||| ||||||||||||||||||||||||  |||||||||||||||||||    
T  5884481 ttgcaaaagcactgcatttacttcacttcatgcaagttgtacaatgaatgcattataat 5884423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 214 - 272
Target Start/End: Complemental strand, 54945835 - 54945777
Alignment:
Q  214 ttgcaaaaacactccatttacttcacttcatgcaagttacacaatgaatgcattataat 272  Q
    |||||||| |||| ||||||||||||||||||||||||  |||||||||||||||||||    
T  54945835 ttgcaaaagcactgcatttacttcacttcatgcaagttgtacaatgaatgcattataat 54945777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 86 - 145
Target Start/End: Complemental strand, 33519215 - 33519156
Alignment:
Q  86 tttctaactctctctttatatgcattatctctcattctaagctacactttgcttatgtgt 145  Q
    ||||||||| | |||||| ||||||| ||||||||||||||||||||||| |||||||||    
T  33519215 tttctaactatttctttacatgcattctctctcattctaagctacactttacttatgtgt 33519156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 3744520 - 3744444
Alignment:
Q  16 atatatacatgtattctaacctacatttttcctatgtgtcacctcacaaacatccccctttctaactatttttctaa 92  Q
    ||||||||||||||||||||||||| ||| | ||||||||||||||| ||    ||||| |||||||| ||||||||    
T  3744520 atatatacatgtattctaacctacactttgcttatgtgtcacctcaccaattctcccctctctaactaattttctaa 3744444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 119 - 157
Target Start/End: Complemental strand, 3744508 - 3744470
Alignment:
Q  119 attctaagctacactttgcttatgtgtcacctcaccaat 157  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  3744508 attctaacctacactttgcttatgtgtcacctcaccaat 3744470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 119 - 156
Target Start/End: Complemental strand, 3738591 - 3738554
Alignment:
Q  119 attctaagctacactttgcttatgtgtcacctcaccaa 156  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  3738591 attctgagctacactttgcttatgtgtcacctcaccaa 3738554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 26297728 - 26297655
Alignment:
Q  19 tatacatgtattctaacctacatttttcctatgtgtcacctcacaaacatccccctttctaactatttttctaa 92  Q
    |||||||||||||||| ||||| ||| | ||||||| ||||||| ||  | |||||||||||||| ||||||||    
T  26297728 tatacatgtattctaaactacactttgcttatgtgttacctcaccaattttcccctttctaactaattttctaa 26297655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 346609 - 346676
Alignment:
Q  17 tatatacatgtattctaacctacatttttcctatgtgtcacctca-caaacatccccctttctaacta 83  Q
    |||||||||||||||||| ||||||||| | ||||||||| |||| ||||  ||||| ||||||||||    
T  346609 tatatacatgtattctaaactacattttgcttatgtgtcatctcaccaaaactccccatttctaacta 346676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 304 - 412
Target Start/End: Original strand, 26215432 - 26215538
Alignment:
Q  304 aaaattattcatattcttaatcaatcctctt--acacacaagtttattactatatagctcctcannnnnnnctaagcttatatatatgttgcttatgatg 401  Q
    ||||||||||||||||||| |||||| ||||  ||||||||||   |||||||| |||||||||       ||||||| |||||||||||||||||| |     
T  26215432 aaaattattcatattcttagtcaatcatcttacacacacaagt---ttactataaagctcctca-ttttttctaagctcatatatatgttgcttatgtta 26215527  T
Q  402 tccatctcatt 412  Q
    ||| |||||||    
T  26215528 tccttctcatt 26215538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 35870216 - 35870283
Alignment:
Q  16 atatatacatgtattctaacctacatttttcctatgtgtcacctcacaaacatccccctttctaacta 83  Q
    ||||||| || |||||||| |||||||||| ||||||||||||| || ||   |||||||||||||||    
T  35870216 atatatatatatattctaagctacattttttctatgtgtcaccttaccaatgcccccctttctaacta 35870283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 157
Target Start/End: Complemental strand, 26297719 - 26297681
Alignment:
Q  119 attctaagctacactttgcttatgtgtcacctcaccaat 157  Q
    ||||||| ||||||||||||||||||| |||||||||||    
T  26297719 attctaaactacactttgcttatgtgttacctcaccaat 26297681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 33519273 - 33519233
Alignment:
Q  16 atatatacatgtattctaacctacatttttcctatgtgtca 56  Q
    |||||||||||||||||||||||||| || | |||||||||    
T  33519273 atatatacatgtattctaacctacatattgcttatgtgtca 33519233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 54949277 - 54949201
Alignment:
Q  16 atatatacatgtattctaacctacatttttcctatgtgtcacctcacaaacatccccctttctaactatttttctaa 92  Q
    ||||||||||||||||||| ||||| ||| | ||  ||||||| ||| ||   ||||||||||||||| ||||||||    
T  54949277 atatatacatgtattctaagctacactttacttacatgtcaccacaccaatgcccccctttctaactaattttctaa 54949201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 136; Significance: 8e-71; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 186 - 341
Target Start/End: Complemental strand, 8150633 - 8150478
Alignment:
Q  186 ttactatctatctttcattttccatcagttgcaaaaacactccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaat 285  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||    
T  8150633 ttactatctatctttcatttcccatcagttgcaaaaacactccatttacttcactttatgcgagttacacaatgaatgcattataatcaattttattaat 8150534  T
Q  286 attgaggggttacattttaaaattattcatattcttaatcaatcctcttacacaca 341  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  8150533 attgaggggttacattttaaaattattcatattcttaatcagtcctcttacacaca 8150478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 186 - 341
Target Start/End: Original strand, 10186354 - 10186509
Alignment:
Q  186 ttactatctatctttcattttccatcagttgcaaaaacactccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaat 285  Q
    |||||||||||||||||||| | |||||||||||||||| | ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  10186354 ttactatctatctttcatttcctatcagttgcaaaaacatttcatttacctcacttcttgcaagttacacaatgaatgcattataatccattttattaat 10186453  T
Q  286 attgaggggttacattttaaaattattcatattcttaatcaatcctcttacacaca 341  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  10186454 attgaggggttacattttaaaattgttcatattcttaatcaatcctcttacacaca 10186509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 186 - 412
Target Start/End: Original strand, 20171957 - 20172180
Alignment:
Q  186 ttactatcta-tctttcattttccatcagttgcaaaaacactccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaa 284  Q
    |||||||||| |||||||||| |||||| ||| |||||| ||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  20171957 ttactatctaatctttcatttcccatcaattggaaaaactctctatttacttcacttcatggaagttacacaatgaatgtattataatccattttattaa 20172056  T
Q  285 tattgaggggttacattttaaaattattcatattcttaatcaatcctctt--acacacaagtttattactatatagctcctcannnnnnnctaagcttat 382  Q
    || ||||||||| ||||||||||||||||||||||||| |||||| ||||  ||||||||||   |||||||| |||||||||       ||||||| ||    
T  20172057 tagtgaggggtttcattttaaaattattcatattcttagtcaatcatcttacacacacaagt---ttactataaagctcctca---ttttctaagctcat 20172150  T
Q  383 atatatgttgcttatgatgtccatctcatt 412  Q
    |||||||||||||||| | ||| |||||||    
T  20172151 atatatgttgcttatgttatccttctcatt 20172180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 195 - 341
Target Start/End: Original strand, 4138333 - 4138479
Alignment:
Q  195 atctttcattttccatcagttgcaaaaacactccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatattgagggg 294  Q
    ||||||||||| | ||| |||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  4138333 atctttcatttcctatccgttgcaaaaacatttcatttacttcacttcttgcaagttacacaatgaatgcattataatctattttattaatattgagggg 4138432  T
Q  295 ttacattttaaaattattcatattcttaatcaatcctcttacacaca 341  Q
    |||| |||||||||| |||||||||||||||||  ||||||||||||    
T  4138433 ttacgttttaaaattgttcatattcttaatcaagactcttacacaca 4138479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 265 - 334
Target Start/End: Complemental strand, 919018 - 918949
Alignment:
Q  265 attataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctctt 334  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  919018 attataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctctt 918949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 186 - 261
Target Start/End: Complemental strand, 11428260 - 11428184
Alignment:
Q  186 ttactatcta-tctttcattttccatcagttgcaaaaacactccatttacttcacttcatgcaagttacacaatgaa 261  Q
    |||||||||| ||||||||||||||||| ||| ||||||  |||||||||||||||||||| |||||||||||||||    
T  11428260 ttactatctaatctttcattttccatcaattggaaaaactatccatttacttcacttcatggaagttacacaatgaa 11428184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 17 - 157
Target Start/End: Complemental strand, 14597555 - 14597427
Alignment:
Q  17 tatatacatgtattctaacctacatttttcctatgtgtcacctcacaaacatccccctttctaactatttttctaactctctctttatatgcattatctc 116  Q
    |||||||||||||||||| ||||||||| ||||| |||||||| || ||   |||||||||||||||            |||||||||||   || ||||    
T  14597555 tatatacatgtattctaagctacattttgcctatatgtcaccttaccaattcccccctttctaacta------------tctctttatatatgttctctc 14597468  T
Q  117 tcattctaagctacactttgcttatgtgtcacctcaccaat 157  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  14597467 tcattctaagctacactttacttatgtgtcacctcaccaat 14597427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 288 - 341
Target Start/End: Complemental strand, 11428182 - 11428129
Alignment:
Q  288 tgaggggttacattttaaaattattcatattcttaatcaatcctcttacacaca 341  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||||||||    
T  11428182 tgaggggttacattttaaaattattcatattcttagtcaatcatcttacacaca 11428129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 12274213 - 12274283
Alignment:
Q  16 atatatacatgtattctaacctacatttttcctatgtgtcacctcacaaacatccccctttctaactattt 86  Q
    |||||||||||||| ||||  ||||||||   ||||||||||||||| ||||||||||||| |||||||||    
T  12274213 atatatacatgtatgctaagttacattttgtttatgtgtcacctcaccaacatccccctttttaactattt 12274283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 31686159 - 31686220
Alignment:
Q  19 tatacatgtattctaacctacatttttcctatgtgtcacctcacaaacatccccctttctaa 80  Q
    |||||||||||||||| |||||| || | |||||||||||||||||| | ||||||||||||    
T  31686159 tatacatgtattctaaactacatattgcttatgtgtcacctcacaaaaacccccctttctaa 31686220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 10186227 - 10186294
Alignment:
Q  16 atatatacatgtattctaacctacatttttcctatgtgtcacctcacaaacatccccctttctaacta 83  Q
    ||||||||||||||||||| ||||||||  |||||||||||||| || ||   |||||||||||||||    
T  10186227 atatatacatgtattctaagctacatttcgcctatgtgtcaccttaccaatgcccccctttctaacta 10186294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 4138191 - 4138257
Alignment:
Q  17 tatatacatgtattctaacctacatttttcctatgtgtcacctcacaaacatccccctttctaacta 83  Q
    |||||||||||||||||| ||||||||  |||||||||||||| || ||   |||||||||||||||    
T  4138191 tatatacatgtattctaagctacatttcgcctatgtgtcaccttaccaatgcccccctttctaacta 4138257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 11428388 - 11428342
Alignment:
Q  16 atatatacatgtattctaacctacatttttcctatgtgtcacctcac 62  Q
    ||||||||||||||||||| ||||||||| | |||||||||||||||    
T  11428388 atatatacatgtattctaagctacattttgcttatgtgtcacctcac 11428342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 119 - 157
Target Start/End: Original strand, 28841614 - 28841652
Alignment:
Q  119 attctaagctacactttgcttatgtgtcacctcaccaat 157  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  28841614 attctaagctatactttgcttatgtgtcacctcaccaat 28841652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 32663981 - 32664055
Alignment:
Q  18 atatacatgtattctaacctacatttttcctatgtgtcacctcacaaacatccccctttctaactatttttctaa 92  Q
    ||||||||||||||||| ||||| ||| | ||||||||||||||| ||  |  ||||||||||||| ||||||||    
T  32663981 atatacatgtattctaaactacactttgcttatgtgtcacctcaccaatttttccctttctaactaattttctaa 32664055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 119 - 157
Target Start/End: Original strand, 32663991 - 32664029
Alignment:
Q  119 attctaagctacactttgcttatgtgtcacctcaccaat 157  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  32663991 attctaaactacactttgcttatgtgtcacctcaccaat 32664029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 119 - 158
Target Start/End: Complemental strand, 11428376 - 11428337
Alignment:
Q  119 attctaagctacactttgcttatgtgtcacctcaccaata 158  Q
    ||||||||||||| ||||||||||||||||||||| ||||    
T  11428376 attctaagctacattttgcttatgtgtcacctcactaata 11428337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 153
Target Start/End: Complemental strand, 9083185 - 9083151
Alignment:
Q  119 attctaagctacactttgcttatgtgtcacctcac 153  Q
    ||||||| |||||||||||||||||||||||||||    
T  9083185 attctaaactacactttgcttatgtgtcacctcac 9083151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 146
Target Start/End: Original strand, 12274296 - 12274329
Alignment:
Q  113 tctctcattctaagctacactttgcttatgtgtc 146  Q
    ||||||||| ||||||||||||||||||||||||    
T  12274296 tctctcattataagctacactttgcttatgtgtc 12274329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 28841606 - 28841678
Alignment:
Q  20 atacatgtattctaacctacatttttcctatgtgtcacctcacaaacatccccctttctaactatttttctaa 92  Q
    ||||||||||||||| ||| | ||| | ||||||||||||||| ||   |||||| |||||||| ||||||||    
T  28841606 atacatgtattctaagctatactttgcttatgtgtcacctcaccaattcccccctctctaactaattttctaa 28841678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 32207844 - 32207915
Alignment:
Q  16 atatatacatgtattctaacctacatttttcctatgtgtcacctcacaaacatccccctttctaactattttt 88  Q
    ||||| ||||||||||||||||||| ||| | ||  ||||||||||| ||  |||||||||||||||| ||||    
T  32207844 atatacacatgtattctaacctacactttgcttacatgtcacctcaccaa-ttccccctttctaactaatttt 32207915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0516 (Bit Score: 125; Significance: 3e-64; HSPs: 1)
Name: scaffold0516
Description:

Target: scaffold0516; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 185 - 341
Target Start/End: Original strand, 3246 - 3402
Alignment:
Q  185 tttactatctatctttcattttccatcagttgcaaaaacactccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaa 284  Q
    |||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||| || ||||||||||||||||||||    
T  3246 tttactatttatctttcatttcccatcagttgcaaaaacacttcatttacttcacttcatgcaagttgcacaatgattgaattataatccattttattaa 3345  T
Q  285 tattgaggggttacattttaaaattattcatattcttaatcaatcctcttacacaca 341  Q
    |||| || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  3346 tattaagcggttacattttaaaattattcatattcttaatcaatcctcttacacaca 3402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 16 - 184
Target Start/End: Complemental strand, 1419 - 1266
Alignment:
Q  16 atatatacatgtattctaacctacatttttcctatgtgtcacctcacaaacatccccctttctaactatttttctaactctctctttatatgcattatct 115  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||            || ||| ||||||||  |    
T  1419 atatatacatgtattctaacctacattttgcctatgtgtaacctcacaaacatccccctttctaactatt------------tccttacatgcatta--t 1334  T
Q  116 ctcattctaagctacactttgcttatgtgtcacctcaccaataattcttatttcttcatatgaatttta 184  Q
    |||||| ||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  1333 ctcattataagcaagactttgcttatgtgtcacctcaccaataattcttatttctt-atatgaatttta 1266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 5544 - 5480
Alignment:
Q  16 atatatacatgtattctaacctacatttttcctatgtgtcacctcacaaacatccccctttctaa 80  Q
    |||||||||||||||||||||||||||||||||||||||||||| || ||  | |||||||||||    
T  5544 atatatacatgtattctaacctacatttttcctatgtgtcaccttaccaatgttcccctttctaa 5480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 214 - 272
Target Start/End: Complemental strand, 10229 - 10171
Alignment:
Q  214 ttgcaaaaacactccatttacttcacttcatgcaagttacacaatgaatgcattataat 272  Q
    |||||||| |||| ||||||||||||||||||||||||   ||||||||||||||||||    
T  10229 ttgcaaaagcactgcatttacttcacttcatgcaagttgtgcaatgaatgcattataat 10171  T

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Target: scaffold0061 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 103 - 157
Target Start/End: Original strand, 54073 - 54127
Alignment:
Q  103 atatgcattatctctcattctaagctacactttgcttatgtgtcacctcaccaat 157  Q
    ||||||||| ||| ||||||||| |||||||||||||||||||||||| ||||||    
T  54073 atatgcattctctttcattctaaactacactttgcttatgtgtcacctaaccaat 54127  T

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Target: scaffold0061; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 119 - 157
Target Start/End: Complemental strand, 46422 - 46384
Alignment:
Q  119 attctaagctacactttgcttatgtgtcacctcaccaat 157  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  46422 attctaagctacactttacttatgtgtcacctcaccaat 46384  T

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Target: scaffold0061; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 92
Target Start/End: Complemental strand, 46427 - 46359
Alignment:
Q  23 catgtattctaacctacatttttcctatgtgtcacctcacaaacatccccctttctaactatttttctaa 92  Q
    |||||||||||| ||||| ||| | ||||||||||||||| ||  | |||||||||||||| ||||||||    
T  46427 catgtattctaagctacactttacttatgtgtcacctcaccaa-tttcccctttctaactaattttctaa 46359  T

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Target: scaffold0017 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 103 - 157
Target Start/End: Complemental strand, 144561 - 144507
Alignment:
Q  103 atatgcattatctctcattctaagctacactttgcttatgtgtcacctcaccaat 157  Q
    ||||||||| ||| ||||||||| |||||||||||||||||||||||| ||||||    
T  144561 atatgcattctctttcattctaaactacactttgcttatgtgtcacctaaccaat 144507  T

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Target: scaffold0017; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 119 - 157
Target Start/End: Original strand, 152365 - 152403
Alignment:
Q  119 attctaagctacactttgcttatgtgtcacctcaccaat 157  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  152365 attctaagctacactttacttatgtgtcacctcaccaat 152403  T

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Target: scaffold0017; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 92
Target Start/End: Original strand, 152360 - 152428
Alignment:
Q  23 catgtattctaacctacatttttcctatgtgtcacctcacaaacatccccctttctaactatttttctaa 92  Q
    |||||||||||| ||||| ||| | ||||||||||||||| ||  | |||||||||||||| ||||||||    
T  152360 catgtattctaagctacactttacttatgtgtcacctcaccaa-tttcccctttctaactaattttctaa 152428  T

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