View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9461_low_26 (Length: 411)
Name: NF9461_low_26
Description: NF9461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9461_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 18 - 407
Target Start/End: Complemental strand, 39550613 - 39550221
Alignment:
| Q |
18 |
taactaacattaaaagcctgtaaaaggttctaaacctgaatttgactacggtccatgtaaacttggaagacattgcttgctatgatctttgatggttgtt |
117 |
Q |
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| T |
39550613 |
taactaacattaaaagcctgtaaaaggttctaaacctgaatttgactacggtccatgtaaacttggaagacattgcttgctatgatctttgatggttgtt |
39550514 |
T |
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| Q |
118 |
caaaattgctcacttggttgnnnnnnnttggtc---ataagttacgacttgattgaattttactcgagagttatgatccgatcaggaggaagggtgaaat |
214 |
Q |
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|||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39550513 |
caaaattgctcacttggttgaaaaaagttggtcataataagttacgacttgattgaattttactcgagagttatgatccgatcaggaggaagggtgaaat |
39550414 |
T |
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| Q |
215 |
gttcattcaacaattttcctgatcttttgtctcaaccctattgttagtttgtgatgctagtcttgttttacatccgaggggtgtgttgtttggctgtgtt |
314 |
Q |
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|| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
39550413 |
gtccattcaacaactttcctgatcttttgtctcaaccctattgttagtttgttatgctagtcttgttttacatccgagtgatgtgttgtttggctgtgtt |
39550314 |
T |
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| Q |
315 |
tttggccagttttcaccttcaaccaaatttgttttcactttcacctttagctaaaattcattccatcaagagtctgtttaataacaccaaact |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39550313 |
tttggccagttttcaccttcaaccaaatttgttttcactttcacctttagctaaaattcattccatcaagagtctgtttaataacaccaaact |
39550221 |
T |
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