View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9461_low_27 (Length: 410)
Name: NF9461_low_27
Description: NF9461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9461_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 370; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 17 - 401
Target Start/End: Complemental strand, 31452656 - 31452274
Alignment:
| Q |
17 |
agtaaacttatctaaaatttggtgaatcaaactctcatcatatcatagaaagaatgcgaatcatgcatgttgtttgctgtcaaaattttataataatggt |
116 |
Q |
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| T |
31452656 |
agtaaacttatctaaaatttggtgaatcaaactctcatcatatcatagaaagaatgcgaatcatgcatgttgtttgctgtcaaaattttataataatggt |
31452557 |
T |
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| Q |
117 |
gggatacatgtgagaataaatcaatattctctaattgattgaatctttgtgtataaataggcattcatatattcataataaaatcatagcatggcttgtg |
216 |
Q |
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| T |
31452556 |
gggatacatgtgagaataaatcaatattctctaattgattgaatctttgtgtataaataggcattcatat--tcataataaaatcatagcatggcttgtg |
31452459 |
T |
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| Q |
217 |
taggagaaggccttcagtaaccctcaaaggcttccatggaatcacatgttatggttagattaatcatatctttgaccagtgatgtgaaaaaatcgtggga |
316 |
Q |
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| T |
31452458 |
taggagaaggccttcagtaaccctcaaaggcttccatggaatcacatgttatggttagattaatcataactttgaccagtgatgtgaaaaaatcgtggga |
31452359 |
T |
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| Q |
317 |
tccgttgatgggttactgaaagctttgatccttaattatgtctagcattcattttggagaaatgaaatcagtgtgagagtataat |
401 |
Q |
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| T |
31452358 |
tccgttgatgggttactgaaagctttgatccttaattatgtctagcattcattttggagaaatgaaatcagtgtgagagtataat |
31452274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 89 - 366
Target Start/End: Complemental strand, 31428567 - 31428282
Alignment:
| Q |
89 |
tttgctgtcaaaattttataataatggtgggatacatgtgagaataaatcaat-attctctaattgattgaatctttgtgtataaataggcattcata-- |
185 |
Q |
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| T |
31428567 |
tttgctgtcaaaatttta-aataatggtggcatacatgttagaatcaatcaatcaatctttaattaattttatctttgtgtataaatatgcattcagaat |
31428469 |
T |
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| Q |
186 |
----tattcataataaaatcatagcatggcttgtgtaggagaaggccttcagtaaccctcaaaggcttccatggaatca---catg--ttatggttagat |
276 |
Q |
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| T |
31428468 |
tctgtgttcat--taaaatcatagcatggcttat--aggagaaggccttcagtaaccctcaaaggcttccatggaatcatagcatggcttacggtcagat |
31428373 |
T |
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| Q |
277 |
taatcatatctttgac--cagtgatgtgaaaaaatcgtgggatcc-gttgatgggttactgaaagctttgatccttaattatgtctagcattc |
366 |
Q |
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| T |
31428372 |
taatcatatatttgactatagtgatgtg--aaaatcatgggatcctgttggtgggttactgaaagctttgatccttaattatgtcttgcattc |
31428282 |
T |
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