View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9461_low_29 (Length: 409)
Name: NF9461_low_29
Description: NF9461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9461_low_29 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 18 - 409
Target Start/End: Original strand, 13212235 - 13212635
Alignment:
| Q |
18 |
atactgacactattaaaaatactcacacaagtaattaaatgcaattcatataatctcattatataaatcacacaatcaactctctcatgtttattcttta |
117 |
Q |
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|||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13212235 |
atactgacacaattaaaaattctcacacaagtaattaaatgcaattcatataatctcattatataaatcacacaatcaactctctcatgtttattcttta |
13212334 |
T |
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| Q |
118 |
cactttatttctgtttatgnnnnnnngcaatgtgagagatctcttacacataggtttgtacagtatttatacacatatcaaacatgcttcatgcagcagc |
217 |
Q |
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| T |
13212335 |
cactttatttctgtttatgaaaaaaagcaatgtgagagatctcttacacataggtttgtacagtacttatacacatattaaacatgcttcatgcagcagc |
13212434 |
T |
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| Q |
218 |
aactgcttcttcattcatgttgtgtgcttcctcgttcaaatgctcactgaagccgcacttaccgtccaaaatatcaccaccgcaa---------cctcca |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
13212435 |
aactgcttcttcattcatgttgtgtgcttcctcgttcaaatgctcactgaagccgcacttaccgtccaaaatatcaccaccgcaaccaccacatcctcca |
13212534 |
T |
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| Q |
309 |
ccacagcctccaccacacccgctactcttcttcatgttgtcataattttcacaccctccactccccaccatacttccacaccctcctccacaacctccac |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13212535 |
ccacagcctccaccacacccgctactcttcttcatgttgtcataattttcacaccctccactccccaccatacttccacaccctcctccacaacctccac |
13212634 |
T |
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| Q |
409 |
c |
409 |
Q |
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| T |
13212635 |
c |
13212635 |
T |
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