View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9461_low_3 (Length: 684)
Name: NF9461_low_3
Description: NF9461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9461_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 579; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 579; E-Value: 0
Query Start/End: Original strand, 13 - 669
Target Start/End: Complemental strand, 35208977 - 35208324
Alignment:
| Q |
13 |
agcataggaatgggagaaaggattcaagtatatggtaccaaccttggctagttggcttcgtatcttggcaacaactactcatcatttggagtgtccacat |
112 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
35208977 |
agcataggaacgggagaaaggattcaagtatatggtaccaaccttggctagttggcttcgtatctt---aacaactactcatcatttggagtgtccacat |
35208881 |
T |
|
| Q |
113 |
atcactgtttcatatttaatggtcacaacttaactcagaagcaatgaaatatagagctaattaatggactctttgaccataacacaacgatagggatatt |
212 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
35208880 |
atcactgtttcagatttaatggtcacaacttaactcagaagcaatgaaatatggagctaattaatggactctttgaccataacacaaccataaggatatt |
35208781 |
T |
|
| Q |
213 |
taatactccatgacatgcctacttggaagattaataaagatggtggttatatggtcaggagtgtgtacatggaattcatgaatcataatttagaagctca |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35208780 |
taatactccatgacatgcctacttggaagattaataaagatggtggttatatggtcaggagtgtgtacatggaattcatgaatcataatttagaagctca |
35208681 |
T |
|
| Q |
313 |
acaacaacgtgtgtcgggaattggaacaaaatttggaaattgaagttgccatcgaaggtaaacaactttatgtggagaattttccgcaattgcttgccta |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35208680 |
acaacaacgtgtgtcgggaattggaacaaaatttggaaattgaagttgccattgaaggtaaacaactttatgtggagaattttccgcaattgcttgccta |
35208581 |
T |
|
| Q |
413 |
cgagagttagattgcaaacgaaaggtgcttagctccccgatcaatgtgcggtttttgaagaatatattgaagatatcgatcatattttcttcaagtgtag |
512 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
35208580 |
cgagagttagattgcaaatgaaaggtgcttagctccccgatcaatgtgcggtttttgaagaatatattgaagatatcgatcatattttcttcaagtgcag |
35208481 |
T |
|
| Q |
513 |
tataagtgttctttcctagcaaggtaccgatttatgggatgcattgctatccattatcgatcatgaggcaagtttctcagggaatgtgtttgctattcta |
612 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
35208480 |
tataagtgttcttttctagcagcgtaccgatttatgggatgcattgctatccattatcgatcatgaggcaagtttctcggggaatgtgtttgctgttcta |
35208381 |
T |
|
| Q |
613 |
caacactttgtgaaagcacggcaacaagcttttggtgtgactctctggagtatttgg |
669 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
35208380 |
caacactttgtgaaagcgcggcaacaagcttttggtgcgactctctagagtatttgg |
35208324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 142
Target Start/End: Original strand, 32208398 - 32208447
Alignment:
| Q |
93 |
atcatttggagtgtccacatatcactgtttcatatttaatggtcacaact |
142 |
Q |
| |
|
||||||||||||| ||||||||||| ||| || | ||||||||||||||| |
|
|
| T |
32208398 |
atcatttggagtggccacatatcaccgttgcagacttaatggtcacaact |
32208447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University