View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9461_low_31 (Length: 403)
Name: NF9461_low_31
Description: NF9461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9461_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 156; Significance: 9e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 143 - 392
Target Start/End: Original strand, 39753377 - 39753619
Alignment:
| Q |
143 |
atcccacaagaatcattcaaattggagatttgtgtcttgtcctgtaatgtgtattcgagaacctatttagttcatcggtggggagattgttgacaagaca |
242 |
Q |
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| T |
39753377 |
atcccacaagaattatgcaaattggagatttgtgtattgtcctgtaatgtgtattcgagaacctatttagttcatcggaggggagattgtggacaagaca |
39753476 |
T |
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| Q |
243 |
aaaccacaagctgcataaataatnnnnnnnnnnnnnnnngggaaagctctatcttgtggacgagacattggaagttcttaaaagttaaatcacatacatt |
342 |
Q |
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| T |
39753477 |
aaaccacaagctgcataaataataaaaaagaaaagaaaagggaaagctctatcttgtggacgagacattggaagttc-------ttaaatcacatacatt |
39753569 |
T |
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| Q |
343 |
caagaaaatagtatagtatagagaggagcctaattcagtctcagatgatg |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39753570 |
caagaaaatagtatagtatagagaggagcctaattcagtctcagatgatg |
39753619 |
T |
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