View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9461_low_35 (Length: 391)
Name: NF9461_low_35
Description: NF9461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9461_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 355; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 19 - 381
Target Start/End: Complemental strand, 34315809 - 34315447
Alignment:
| Q |
19 |
actgggtatttgatatcagcagaatccaatttaagagcatcatgaagcatctgttgattcataccagaagtatcagcatggcaaacagctattgcttgag |
118 |
Q |
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| T |
34315809 |
actgggtatttgatatcagcagaatccaatttaagagcatcatgaagcatctgttgattcataccagaagtatcagcatggcaaacagctattgcttgag |
34315710 |
T |
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| Q |
119 |
ttttggttccatcaccggccaccaacggaaccatgaaagctgtggttgcacgaattctatgacaataatatacaaccttttggaaattcaacctgtgaca |
218 |
Q |
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| T |
34315709 |
ttttggttccatcaccggccaccaacggaaccatgaaagctgtggttgcacgaattctatgacaataatatacaaccttttggaaattcaacctgtgaca |
34315610 |
T |
|
| Q |
219 |
catcacccctttatctccaagattttgaacagactctacagtgtattgttcttgattatctatgaaggaacttgaaagtgcttgaatgttgtttccaagc |
318 |
Q |
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| T |
34315609 |
catcacccctttatctccaagattttgtacagactctacagtgtattgttcttgattatctattaaggaacttgaaagtgcttgaatgttgtttccaagc |
34315510 |
T |
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| Q |
319 |
tttgaaatggcaaactcaattaatgatcccaaagatttagcacaatgcttctgttctcctatg |
381 |
Q |
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| T |
34315509 |
tttgaaatggcaaactcaattaatgatcccaaagatttagcacaatgcttctgttctcctatg |
34315447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 73 - 363
Target Start/End: Complemental strand, 34251350 - 34251060
Alignment:
| Q |
73 |
tgattcataccagaagtatcagcatggcaaacagctattgcttgagttttggttccatcaccggccaccaacggaaccatgaaagctgtggttgcacgaa |
172 |
Q |
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| T |
34251350 |
tgattcatgcctgaagtatcagtatgacaaacagctagtgcctgagtttttcttccatcattagccaccaatggaaccataaaagctgttgttccatgaa |
34251251 |
T |
|
| Q |
173 |
ttctatgacaataatatacaaccttttggaaattcaacctgtgacacatcacccctttatctccaagattttgaacagactctacagtgtattgttcttg |
272 |
Q |
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| T |
34251250 |
tttcatgacaataaaatacaaccttttgaaagttcaacctatgacacatcactgctttctctccaagattttgaactgactctattttgtattgttcatg |
34251151 |
T |
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| Q |
273 |
attatctatgaaggaacttgaaagtgcttgaatgttgtttccaagctttgaaatggcaaactcaattaatgatcccaaagatttagcacaa |
363 |
Q |
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| T |
34251150 |
tttatcaatgaaggaacttgaaagtgcttgaatattttttccaagcttagaaattgaaaatccgattaatgttcctaaggattttgcacaa |
34251060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 60 - 363
Target Start/End: Complemental strand, 34241601 - 34241298
Alignment:
| Q |
60 |
atgaagcatctgttgattcataccagaagtatcagcatggcaaacagctattgcttgagttttggttccatcaccggccaccaacggaaccatgaaagct |
159 |
Q |
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||||||||| ||||||||||| || ||| |||||||||||||| ||||||||| |||||||| ||||||||| |||||||| |||||| | |||||| |
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| T |
34241601 |
atgaagcatatgttgattcatgcctgaaatatcagcatggcaagtagctattgcatgagtttttgttccatcattagccaccaatggaaccttaaaagct |
34241502 |
T |
|
| Q |
160 |
gtggttgcacgaattctatgacaataatatacaaccttttggaaattcaacctgtgacacatcacccctttatctccaagattttgaacagactctacag |
259 |
Q |
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| T |
34241501 |
gttgttccatgaacttcatgacaataaaatacaactttttgaaagttcaacctatgacacatcactgctttgtctccaagattttgcaccgattctattt |
34241402 |
T |
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| Q |
260 |
tgtattgttcttgattatctatgaaggaacttgaaagtgcttgaatgttgtttccaagctttgaaatggcaaactcaattaatgatcccaaagatttagc |
359 |
Q |
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| T |
34241401 |
tgtattgttcatgtttatcaatgaaggaacttgaaagtgattgaatattttttccaagttttgaaattgcaaatccaattaatgttcctaaggattttgc |
34241302 |
T |
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| Q |
360 |
acaa |
363 |
Q |
| |
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|||| |
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| T |
34241301 |
acaa |
34241298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 238
Target Start/End: Complemental strand, 17004298 - 17004238
Alignment:
| Q |
178 |
tgacaataatatacaaccttttggaaattcaacctgtgacacatcacccctttatctccaa |
238 |
Q |
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||||||||| ||||||| |||| |||||| || || |||||||||||| |||| ||||||| |
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| T |
17004298 |
tgacaataaaatacaacatttttgaaatttaatctatgacacatcaccactttgtctccaa |
17004238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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